Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00012 ATGCCTGGCTTGGTTTCCGTTAAAACTCCACCAGATGCGCCACCCCTCAGCATCACAGTCCCGGAAACAAACACCCAGACCCAACTCCAAACGCAAATTCCTCAGAGATCTGAATCCGATAACCTCAAAACCCCGTCTCCTCTTCCCAAGAAGCCACCTTCTCCCTCACCCTCTCGATCCAAGCCCTCACCGGATCGCAAGAAGAAACCATCCGACAGCCCCAATCAACCTCCCCTACCAGATGCCTCCCTAGACAACCCTGATCTCGGTCCTTTTCTGCTCAAGCTAGCGCGGGACACCATTGCTTCCGGAGAAGGCCCGGCAAGAGCCTTAGACTACGCCATTCGGGCCTCTAAGTCATTCGAGCGCTGTGCGGTTGATGGACAGCCCAGCCTGGACTTGGCCATGAGCTTGCACGTCCTCGCAGCCATTTACTGTAGCCTTGGGAGGTTCGAGGACGCAGTGCCCGTTCTGGAACGGGCCATCCAGGTCCCCGATGTTTCTTTGGGTGCAGATCACGCGCTTGCTGCCTTCTCTGGTTATATGCAGTTGGGGGATACATATTCCATGCTTGGCCAGGTAGACCGTTCCATTGCTTGCTATGAACAAGGCCTTAAGATCCAGATCGACGCATTAGGTGAGACCGATCCCCGTGTAGGAGAAACTTGCAGATATCTAGCTGAGGCTAACGTTCAAGCAATGCATTTTGATAAAGCGGAGGAACTGTGCAAGAAAACTCTCGAAATTCACCGTACACACAGTAAACGTGCATCTCTTGAAGAGGCAGCTGACCGAAGGCTCATGGCTCTCATATTTGAGGCGAAGGGAGACTTTGAATCAGCACTAGAGCACCTTGTGCTTGCCAGCATGGCTATGATTGCAAATGGGCAAGACAATGAGGTTGCTGCAATTGATGTCAGTATTGGGAACATTTACATGTCCCTTTGTCGCTATGATGAAGCTGTCTTTTCGTACCAGAAGGCTCTCACAGTCTTCAAATCATCCAAGGGTGACAACCACTCCTCTGTTGCCTCTGTATTTGTACGCCTTGCTGACCTTTATCATAGGACTGGAAAACTTCGAGAGTCAAAGTCTTACTGTGAAAATGCATTGCGTATATACTCTAAACCAGTGCCTGGAACCACTGCAGAAGAAATTGCATCTGGACTGACTGAAGTTTCAGCCATTTATGAATCTGTGGATGAGCATGAGGAGGCTCTGAAACTCTTGCAGAGGGCAATGAAGTTATTAGAGGATAAACCTGGACAACAGAGCACTGTTGCTGGAATTGAAGCACGAATGGGAGTGATGTTTTATATGATTGGGAGTTATGAAGAAGCAAGGAACTCATTTGGAAATGCTGTGGCGAAGCTGAGAGCTAGTGGTGAGAGAAAGTCCGCATTCTTCGGAGTTGTACTGAATCAGATGGGATTAGCCTGTGTGCAGCTCTTCAAGATAGATGAGGCTGCGGAGTTGTTTGAAGAGGCCAGGGGAATTTTGGAACAAGAGTGTGGGCCATGCCACCAAGATACTCTTGGGGTGTATAGCAATCTTGCTGCAACATACGATGCCACAGGAAGGGTAGGAGATGCTATCGAGATTTTGGAATATGTTCTTAAATTAAGGGAAGAAAAACTTGGAATCGCAAATCCTGATTTTGAAGAGGAGAAGCGGCGATTAGCAGAACTCCTGAAAGAAGCTGGAAAAACCCGAGACAGAAAGGCAAAATCACTGGAAAACCTCATTGATACCAACTCCAAAAGAACAAAGAAAGAGACAGGGAAGAGGTGGCCTGGATTGGGTTTTAGAATATGA 1815 0.4848 MPGLVSVKTPPDAPPLSITVPETNTQTQLQTQIPQRSESDNLKTPSPLPKKPPSPSPSRSKPSPDRKKKPSDSPNQPPLPDASLDNPDLGPFLLKLARDTIASGEGPARALDYAIRASKSFERCAVDGQPSLDLAMSLHVLAAIYCSLGRFEDAVPVLERAIQVPDVSLGADHALAAFSGYMQLGDTYSMLGQVDRSIACYEQGLKIQIDALGETDPRVGETCRYLAEANVQAMHFDKAEELCKKTLEIHRTHSKRASLEEAADRRLMALIFEAKGDFESALEHLVLASMAMIANGQDNEVAAIDVSIGNIYMSLCRYDEAVFSYQKALTVFKSSKGDNHSSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIASGLTEVSAIYESVDEHEEALKLLQRAMKLLEDKPGQQSTVAGIEARMGVMFYMIGSYEEARNSFGNAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDATGRVGDAIEILEYVLKLREEKLGIANPDFEEEKRRLAELLKEAGKTRDRKAKSLENLIDTNSKRTKKETGKRWPGLGFRI* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00012 604 Pfam Tetratricopeptide repeat 301 375 - -
Pte12g00012 604 Pfam Tetratricopeptide repeat 472 544 - -
Pte12g00012 604 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 33 587 - -
Pte12g00012 604 SUPERFAMILY TPR-like 176 375 IPR011990 GO:0005515
Pte12g00012 604 MobiDBLite consensus disorder prediction 46 60 - -
Pte12g00012 604 Coils Coil 553 573 - -
Pte12g00012 604 ProSiteProfiles TPR repeat profile. 387 420 IPR019734 GO:0005515
Pte12g00012 604 MobiDBLite consensus disorder prediction 18 44 - -
Pte12g00012 604 Gene3D Tetratricopeptide repeat domain 290 470 IPR011990 GO:0005515
Pte12g00012 604 Gene3D Tetratricopeptide repeat domain 471 596 IPR011990 GO:0005515
Pte12g00012 604 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 464 581 - -
Pte12g00012 604 MobiDBLite consensus disorder prediction 1 87 - -
Pte12g00012 604 SMART tpr_5 387 420 IPR019734 GO:0005515
Pte12g00012 604 SMART tpr_5 178 211 IPR019734 GO:0005515
Pte12g00012 604 SMART tpr_5 302 335 IPR019734 GO:0005515
Pte12g00012 604 SMART tpr_5 220 253 IPR019734 GO:0005515
Pte12g00012 604 SMART tpr_5 135 168 IPR019734 GO:0005515
Pte12g00012 604 SMART tpr_5 428 461 IPR019734 GO:0005515
Pte12g00012 604 SMART tpr_5 512 545 IPR019734 GO:0005515
Pte12g00012 604 SMART tpr_5 344 377 IPR019734 GO:0005515
Pte12g00012 604 SMART tpr_5 262 295 IPR019734 GO:0005515
Pte12g00012 604 SMART tpr_5 470 503 IPR019734 GO:0005515
Pte12g00012 604 Pfam MalT-like TPR region 139 285 IPR041617 -
Pte12g00012 604 Gene3D Tetratricopeptide repeat domain 107 289 IPR011990 GO:0005515
Pte12g00012 604 ProSiteProfiles TPR repeat profile. 302 335 IPR019734 GO:0005515
Pte12g00012 604 SUPERFAMILY TPR-like 428 570 IPR011990 GO:0005515
Pte12g00012 604 Coils Coil 400 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00012 Pte-Chr12 238006 241310 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00012 - - mnt:21391217 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00012 12 238006 241310 Pte12g00012 12 238006 241310 RCT