Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01442 GGGAAAGGGAAAGGGAGAGAGAAGAGATGGATGCATTTGATGAGCAGTGTGATTACCTGTTCAAGGCAGTGCTGATTGGGGACTCAGGAGTTGGGAAGACAAATCTGATATCAAGATTTGCAAAAGATGAATTCAGGTTTGATTCAAAGCCCACAATAGGTGTTGAATTTGCTTACAGAAACATCAAAGTCAGAGACAAGCTCATCAAAACACAGATATGGGACACTGCCGGCCAAGAGAGGTTTAGAGCTATCACAAGCTCGTACTACAGAGGAGCCTTGGGAGCAATGCTAGTGTATGACATAACCAAGAGAGCAACTTTTGTGAATGTAGGAAAATGGTTACACGAGTTGAGAGAGTTTGGAGGAGAAGACATGGTGATTGTTTTGGTGGGAAACAAATCTGATTTGGATCAATCAAGGGAAGTTGAGAAAGAAGAAGGAAAAGGGTATGCAGAAGCAGAAAGATTATGGTTCATGGAAACCTCTGCTTTGCAGAATCTGAATGTTGAGGAAGCATTCTTAGAAATGATTACCAAGATCCATGACATTATAAGCCTGAAAAGTTTGGAAACCAAAATGAATGGTGTATCATTAAATGTTCCTAGTGGGAAGGAGATCTATATAGCTGATGAAGTGACTGCTACTAAACAAGTCAAATATTGTTGCTCATGATTATAGCTTACATGATGAATTTTTGCTATTTTGCAAGATCAACTCAGTTCTTCATTCTTTCTATTTAATTTCCTCACTTTCCTTTTACTTTTTC 768 0.3893 MDAFDEQCDYLFKAVLIGDSGVGKTNLISRFAKDEFRFDSKPTIGVEFAYRNIKVRDKLIKTQIWDTAGQERFRAITSSYYRGALGAMLVYDITKRATFVNVGKWLHELREFGGEDMVIVLVGNKSDLDQSREVEKEEGKGYAEAERLWFMETSALQNLNVEEAFLEMITKIHDIISLKSLETKMNGVSLNVPSGKEIYIADEVTATKQVKYCCS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01442 215 Pfam Ras family 13 173 IPR001806 GO:0003924|GO:0005525
Pste9g01442 215 ProSiteProfiles small GTPase Ras family profile. 6 205 IPR001806 GO:0003924|GO:0005525
Pste9g01442 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 185 IPR027417 -
Pste9g01442 215 ProSiteProfiles small GTPase Rab1 family profile. 7 214 - -
Pste9g01442 215 PRINTS Transforming protein P21 ras signature 35 51 - -
Pste9g01442 215 PRINTS Transforming protein P21 ras signature 53 75 - -
Pste9g01442 215 PRINTS Transforming protein P21 ras signature 150 172 - -
Pste9g01442 215 PRINTS Transforming protein P21 ras signature 115 128 - -
Pste9g01442 215 PRINTS Transforming protein P21 ras signature 12 33 - -
Pste9g01442 215 SMART ran_sub_2 17 212 - -
Pste9g01442 215 CDD Rab11_like 9 173 - -
Pste9g01442 215 Gene3D - 4 214 IPR027417 -
Pste9g01442 215 ProSiteProfiles small GTPase Rho family profile. 5 173 - -
Pste9g01442 215 FunFam ras-related protein RABA5a 4 214 - -
Pste9g01442 215 NCBIfam small GTP-binding protein domain 11 165 IPR005225 GO:0005525
Pste9g01442 215 PANTHER DRAB11-RELATED 6 184 - -
Pste9g01442 215 SMART ras_sub_4 9 175 - -
Pste9g01442 215 SMART rho_sub_3 14 175 IPR001806 GO:0003924|GO:0005525
Pste9g01442 215 SMART rab_sub_5 12 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01442 Pste-Chr9 13861935 13866069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01442 13 165 EF-hand Containing Proteins AT5G27540 27.879 9.47e-07 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01442 9 13861935 13866069 Pste9g01442 9 13861935 13866069 ECH