Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01992 ATGTGTCCCCTAACAGCGAGTGATTTGCAACGGATTTTTGAGAAGCTGGACAAGAATGGTGATGGGTTTTTGAGCCTTGAGGAGCTGAACATGCTGCTAGAGAAGACAGGTTTCAGTTACAGCATTGAGGAGTTGGAGTCTCTTGTGGGAAAGAAGAGCCTTGACTTCGGTGAGTTTTTGTTATTCTATGAAACTATGTTGAAGCAGAACAATGGGGAGGAAGAAGGGGCTAGTGATGGGAATGAAAGTGATGAGGTTGAGGAAGTGGAGAGGGACCTTGTGAAGGCTTTCAAGGTGTTTGATTTGGATGGTGATGGTTTCATCACATGCCAAGAGCTTGAGTGTGTTTTGAAGAGACTTGGCATGTGGGATGAAAGATGTGGCAAAGATTGTTCAAGCATGATTTGCTCCTACGACACTAATTTTGATGGGAAGCTTGATTTTCAGGAGTTTAAGAACATGATGCTGCTTACAACTTCATGA 483 0.4348 MCPLTASDLQRIFEKLDKNGDGFLSLEELNMLLEKTGFSYSIEELESLVGKKSLDFGEFLLFYETMLKQNNGEEEGASDGNESDEVEEVERDLVKAFKVFDLDGDGFITCQELECVLKRLGMWDERCGKDCSSMICSYDTNFDGKLDFQEFKNMMLLTTS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01992 160 ProSiteProfiles EF-hand calcium-binding domain profile. 126 160 IPR002048 GO:0005509
Pste8g01992 160 Pfam EF-hand domain pair 92 155 IPR002048 GO:0005509
Pste8g01992 160 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
Pste8g01992 160 Gene3D - 5 66 - -
Pste8g01992 160 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Pste8g01992 160 FunFam Probable calcium-binding protein CML44 5 66 - -
Pste8g01992 160 CDD EFh 92 155 IPR002048 GO:0005509
Pste8g01992 160 SUPERFAMILY EF-hand 7 157 IPR011992 -
Pste8g01992 160 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 67 155 - -
Pste8g01992 160 Gene3D - 67 159 - -
Pste8g01992 160 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Pste8g01992 160 SMART efh_1 130 158 IPR002048 GO:0005509
Pste8g01992 160 SMART efh_1 92 120 IPR002048 GO:0005509
Pste8g01992 160 SMART efh_1 8 36 IPR002048 GO:0005509
Pste8g01992 160 FunFam Probable calcium-binding protein CML44 67 158 - -
Pste8g01992 160 Pfam EF hand 8 35 IPR002048 GO:0005509
Pste8g01992 160 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01992 Pste-Chr8 15772930 15773412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01992 4 156 EF-hand Containing Proteins AT1G21550 43.506 3.06e-37 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01992 8 15772930 15773412 Pste8g01992 8 15772930 15773412 ECH