Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01279 TTGCGGGTTTTTTCTCTTCTCATAGTAGTATATTAGGGTCCGATCCAATCCCCTTCTCACAAACGGTTCCAACTGTCACCGTCCGATACTTGTTCATCCTCGCAATCTGAACCGTCCGTTCACTCACCCTTCCACTATGTCTTTCCCTCACCCACTTTGGTCCTTCCTCTCCGATTGGCCAGTTCGGCGGTTCCATCCCGATCCGATTGGCTCGTCTTCGGTGCTAAAATTTTTTTCCTGAAATTCTCATACCTCATATCATCGTTCATCGCGCTCTGGATCTTCCTCCTTCTTTGGCGGCGCGGCTTTTCACACGTGTCATTTAATTCTCCTGCTACTTTTTCTTCCTCCGATCCGTGCTGAGAATTCGAGATCTCCGGAACAAACAGTTTTGGCGGTTATGGAGGATCGGGACGCGAGGCGGATGATTTCCACGACCAAGTTATCGGATGTGGTGCTGGACTGCGTGATGCCGTACATCCACGACCCCAAGGACCGCGACGCTGTGTCGCAGGTGTGCCGGCGGTGGTATGAGTTGGACTCGCTCACGCGGAAGCACGTCACCATTGCGCTCTGCTACACCACCACGCCGGACCGGCTCCGGCGGCGCTTCCCGCATCTCGAGTCTCTGAATTTGAAGGGGAAGCCTCGGGCTGCCATGTTCAACCTCATACCGGAGGATTGGGGCGGTTTTGTTACACCTTGGGTTAGAGAGATCTCTCGCTACTTTGATTGCTTAAAGTCCCTTCACTTTCGCCGCATGATTGTGAGAGATTCCGATCTTCAGGTTCTGGCTCGTTCCCGCGGTCATGTTCTCCAAGCGCTTAAGCTCGATAAGTGCTCTGGATTCTCCACCGATGGCCTTTACTATATCGGTCGATTTTGCAGGAATTTAAGAATCTTGTTTTTAGAGGAGAGCTCACTTGTTGAGAATGATGGTGACTGGCTCCATGAGCTTGCTATGAATAATACAGTTCTTGAGACACTGAACTTTTACTTGACTGATATTGCAAATGTCAGAATTCAGGACCTGGAACTGATAGCCAGAAATTGCCCCAACTTAAACTCTGTGAAAATTACTGATTGTGAAGTATTAGATCTGGTGAACTTCTTTCGATATGCATCTTCCCTAGAAGAATTTTGTGGAGGTTCCTACAATGAGGAATCGGAGAAGTACGCTGCTATAGCATTGCCAGCAAAATTAAGTCGTTTGGGTTTGACATATATTACAAAGAATGAAATGCCCATAGTGTTCCCTTATGCCGCCTTACTTAAAAAATTGGATCTTCTCTATGCAATGCTGGATACAGAGGACCATTGTACGTTAATCCAAAGGTGCCCCAACTTGGAAGTCCTTGAGTCAAGGAACGTAATTGGAGACAGAGGATTAGAAGTGCTTGCTCGGTGTTGTAGGAGGCTTAAAAGGCTCAGGATTGAACGGGGTGATGATGATCAAGGAATGGAGGATGAAGAAGGTGTTGTTTCCCAGAGAGGATTAATTGCTCTGGCACATGGTTGTCCAAAGCTTGAATACTTGGCCGTTTATGTATCCGACATTACAAATGCATCTCTCGAACACATTGGCACTCACTTGAAAAACCTTTGTGATTTTCGCCTTGTTTTATTAGACCGTGAGGAGAAAATAACTGACTTGCCACTTGACAACGGAGTGAGGGCTTTACTTAGGGGTTGTGACAAGCTTAGAAGATTTGCTCTGTATCTGAGACCTGGCGGCTTGACTGATGTAGGGCTCGGTTACATAGGGCAATACAGTCCAAACGTGAGATGGATGCTTCTTGGTTACGTGGGGGAGACTGATGCAGGGCTTTTGGAGTTCTCAAAGGGTTGCCCCAGTCTCCAGAAACTTGAAATGAGAGGATGTTCCTTTTTTAGTGAGTATGCACTAGCTGTTGCCGCAACTCAACTAAATTCTCTACGGTACCTATGGGTGCAAGGGTATGGAGCATCTCCATCTGGGGGTGATCTTTTGGCAATGGCTCGCCCCTATTGGAATATTGAGTTAATTCCTTCTAGACGCGTGGTTGTGAACAATCATGCAGAAGAGCCTGAAGTTGTTGAGCATCCGGCTCATATTCTTGCATATTACTCCCTTGCTGGACCAAGAACAGATTTTCCAGATACTGTTATACCTTTGGATCCTGCATCATATGTTGACACGTAAAAATGTACATACCACTTTTTTTTCTTTTTTTTTTCTTTTCAAGTTTTCCCCACTTTCAAATCTTGTTTGTAGGTGGTGGCAGTGTTTTAGATTAGATGATTTCAATTTTCTCTCAATTCCTAGACAATAGTCTTGTAATAAGCCCGTGTTCTTTGCTTCCTATCAACTCTTGCAGCAGGTAGTTCCTTTTCCACTGAAGATGTC 2386 0.4602 MEDRDARRMISTTKLSDVVLDCVMPYIHDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPDRLRRRFPHLESLNLKGKPRAAMFNLIPEDWGGFVTPWVREISRYFDCLKSLHFRRMIVRDSDLQVLARSRGHVLQALKLDKCSGFSTDGLYYIGRFCRNLRILFLEESSLVENDGDWLHELAMNNTVLETLNFYLTDIANVRIQDLELIARNCPNLNSVKITDCEVLDLVNFFRYASSLEEFCGGSYNEESEKYAAIALPAKLSRLGLTYITKNEMPIVFPYAALLKKLDLLYAMLDTEDHCTLIQRCPNLEVLESRNVIGDRGLEVLARCCRRLKRLRIERGDDDQGMEDEEGVVSQRGLIALAHGCPKLEYLAVYVSDITNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATQLNSLRYLWVQGYGASPSGGDLLAMARPYWNIELIPSRRVVVNNHAEEPEVVEHPAHILAYYSLAGPRTDFPDTVIPLDPASYVDT 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01279 593 Gene3D Ribonuclease Inhibitor 52 589 IPR032675 -
Pste8g01279 593 Pfam F-box 13 53 IPR041567 -
Pste8g01279 593 SUPERFAMILY F-box domain 7 47 IPR036047 GO:0005515
Pste8g01279 593 SMART LRR_CC_2 483 507 IPR006553 -
Pste8g01279 593 SMART LRR_CC_2 136 161 IPR006553 -
Pste8g01279 593 SMART LRR_CC_2 313 336 IPR006553 -
Pste8g01279 593 SMART LRR_CC_2 373 397 IPR006553 -
Pste8g01279 593 SMART LRR_CC_2 218 237 IPR006553 -
Pste8g01279 593 SMART LRR_CC_2 431 457 IPR006553 -
Pste8g01279 593 FunFam Coronatine-insensitive protein 1 52 588 - -
Pste8g01279 593 FunFam F-box/LRR-repeat protein 4 12 51 - -
Pste8g01279 593 SUPERFAMILY RNI-like 90 345 - -
Pste8g01279 593 CDD F-box_AtTIR1-like 14 51 - -
Pste8g01279 593 Gene3D - 1 51 - -
Pste8g01279 593 SUPERFAMILY RNI-like 270 520 - -
Pste8g01279 593 Pfam Transport inhibitor response 1 protein domain 72 118 IPR041101 -
Pste8g01279 593 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 31 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01279 Pste-Chr8 6805982 6811789 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01279 8 6805982 6811789 Pste8g01279 8 6805982 6811789 ECH
Pste7g02162 7 19859648 19864072 Pste8g01279 8 6805982 6811789 PCT