Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00561 CATCACTCTTCTCTTCTTAATGCGTGCCACCATCACCATGGCCACGGATTCCCATGATTTGTTAGATTCTTGGACAGTGGGGGAGCGCGTGTGTGCGGCGTTGATGCCAATCATAGAGGTGGTTGAGGTGTTGATTTTGGCCGTGACAGGTTGTTTCAGCTTTTGCCCATGCTTCATTATTCTCAACCATAAACGTAACCATGCTGCTAAGGATTTCGCAACTCTCGCTCATGAAACCAGATGTAATTCCACTTACCACCTTATAACTCCAACTTATATTTTTACAGTTAATGAAGTGGAAGCATTGCATGTATTGTTTAAAAGGCTAAGTAGCTCCTTAATTGATGATGATTCGATCCACAAGGAGGAGCTTCAATTGGCTCTGTTTCAAACCCCAAATGGGAAAAACCTTTTCCTGGATCGAGTTTTTGATGTTTTTGACCAAAAGAGAAATGGTGTAATCGAGTTTGACGAATTTGTCCATGCGCTTAGTGTTTTCCATCCTTATGCCCCCATAGATGAAAAAATTGATTTTGCATTTAAGGTCTATGACCTGAGGCAAACTAGGTTTATCGAGCCAGAGGAAGTCAAGCAAATGGTTGCTGCCATTTTGAATGAATTTGACATGAATCTTCCTGATGATTTTCTTGAAGCAATTGTTGACAAGACAATTGCTGATGCGGATAAAGATAATGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGTGAGTCGAAATCCATCCCTGTTGATCAACATGACACTTCCTTGTTTGAAGTATGGATTATAAAACTTCCCTTGTGTTTGATTCTCTTTTCTGGGTGTGTTTGGAAATCAG 841 0.4019 MRATITMATDSHDLLDSWTVGERVCAALMPIIEVVEVLILAVTGCFSFCPCFIILNHKRNHAAKDFATLAHETRCNSTYHLITPTYIFTVNEVEALHVLFKRLSSSLIDDDSIHKEELQLALFQTPNGKNLFLDRVFDVFDQKRNGVIEFDEFVHALSVFHPYAPIDEKIDFAFKVYDLRQTRFIEPEEVKQMVAAILNEFDMNLPDDFLEAIVDKTIADADKDNDGKISKEDWKAFVSRNPSLLINMTLPCLKYGL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00561 257 SMART efh_1 132 160 IPR002048 GO:0005509
Pste8g00561 257 SMART efh_1 169 197 IPR002048 GO:0005509
Pste8g00561 257 SMART efh_1 213 241 IPR002048 GO:0005509
Pste8g00561 257 Pfam EF-hand domain pair 168 237 IPR002048 GO:0005509
Pste8g00561 257 PRINTS Recoverin family signature 229 249 - -
Pste8g00561 257 PRINTS Recoverin family signature 136 157 - -
Pste8g00561 257 PRINTS Recoverin family signature 183 201 - -
Pste8g00561 257 PANTHER CALCINEURIN B 51 254 IPR045198 GO:0005509|GO:0019722|GO:0019900
Pste8g00561 257 Pfam EF hand 133 158 IPR002048 GO:0005509
Pste8g00561 257 SUPERFAMILY EF-hand 82 250 IPR011992 -
Pste8g00561 257 Gene3D - 82 256 - -
Pste8g00561 257 ProSiteProfiles EF-hand calcium-binding domain profile. 165 200 IPR002048 GO:0005509
Pste8g00561 257 ProSiteProfiles EF-hand calcium-binding domain profile. 128 163 IPR002048 GO:0005509
Pste8g00561 257 ProSiteProfiles EF-hand calcium-binding domain profile. 209 244 IPR002048 GO:0005509
Pste8g00561 257 FunFam calcineurin B-like protein 3 78 255 - -
Pste8g00561 257 CDD EFh 169 239 IPR002048 GO:0005509
Pste8g00561 257 ProSitePatterns EF-hand calcium-binding domain. 222 234 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00561 Pste-Chr8 2894430 2898059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00561 87 254 EF-hand Containing Proteins AT5G24270 64.881 1.82e-73 221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00561 8 2894430 2898059 Pste8g00561 8 2894430 2898059 ECH