Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00541 GTTACAGATTACACGAGAGATTTCCACATTCCATTTCCATGGCGAAACCGAAACGTTAGCCATAACAATAATAACCGTCGAAAATGCTCCGAACTCACATTCACATTTTCTCTTCCTTCACCGTTCCGCTCCAATCCTCGCGCGTCCGCTCCTCCTCCGCTCCGACACGGCGGCGTTTGGTCAAAACCGCCGCTCCTCTCGAGCCGAATCTCAAGCAACTCACTTCGCGCATCGTTCAACTCACTCGCCGGAAACAGCTTCGTCAGATTTTGGATGAGGTTGAGGTTGCGAAGAGGCATTTCGAGAAGCTGAACACGATTGTGATGAACGCGGTGGTGGAGGCGTGTGTTCGTTGCGGTGACATCGATTCGGCGCTTAGGATATTCGGTGAGATGAAAAAACGCGATGGTTGTGGTGTGGATAGTGTCACCTATGCCACGCTTTTGAAGGGATTAGGTGAGGCACGAAGAGTCGACGAGGCTTTTGAATTGCTTGAAACTGTGGAAAACGGCACTGCCACAGGAAGTCCAAACTTGTCAGCTCCATTGATCTTTGGTCTGCTAAATGCCTTAATAAAAATAGGAGACTTGCGTCGTGCAAATGGTCTCCTTGCCCGTTATGGTTTTGTTCTTCGTGAAGGTGGCAATTTTTCAGTCTCAGTATACAACATACTAATGAAGGGCTACATAAACTCTGGTTGTCCACACACTGCAATAAACATGCTCAATGAAATTTTACGTCAAGGCATAATGCCTGACAGGCACACATATAACATTCTAATTTTAGCATGTGTAGAGAGTGGAAAGTTGGATGTTGCGATGCAATTTTTTGAGGAAATGAAGGGCAATGCACGGAAATTTGTCAATGTTGATCTGTTTCCAGATATCGTTACATATACAACCATGCTTAAGGGTTTTGGGCAGGCGAAGGATCTTGCTTCAGTTCTGAAAATAGTGCTGGAAATGAAATCTCGTCGTGAATTATACATTGATAGAACTGCTTACACTGCAATAATTGATGCTCTTCTAAAATGTGGCTCAGTTAAGGGTGCTCTCTGTATTTTTGGAGAAATATTGAAGCAGGCTGGTTTGAATGCAAAGCTAAGGCCAAAGCCTCACCTCTATCTCTCCATGATGCGCACTTTTGCTTTTCTAGGAGATTATGATCTTGTTAAAAAATTGCATAAACGGATTTGGCCGGATTCAGCAGGAACCATATTATTAGTTGCTCAGGAAGAAGCCGATCACCTTCTCATGGAAGCAGCACTGAATGCTGGCCAGGTTAATGTTGCGGTCAAAACTCTTACTGAGATTGTTTCAAGATGGAAAGGCATATCCTGGACAAGTCGTGGGGGCATGGTTGCTTATCGTATCGAGGCCATGCTGGGATTCTCAAAGTCGTTATTCAGTCCTCACTTACTTCCTCAGATTTCACCTTCTGAACCGGTTGAGAATTATATGATACAATTTGAAGCAACGCAACCACTACAAGGTACCATAAAGCTGAGGGAAGTGGTTATGCGTTTCTTTGATGAAGCAGTCGTTCCTATTGTAGATGAGTGGGGCAGTTCAATGATGAGAAGCCCTCCTCCCACAGTTACAACTTCAACATCTGTTGGTCACGTAGTTGATTTAATTTTAGAGAAGCGATACCAAATGGTTATTATTGTAAATTATACAAACTCATATGCTACTTCTCCCGACACCTCAAGAGCAGTTGGAGTTTTCACATCAGAACAATTGAGTAGGTTTATCTCACCTGTATCTCAAGTAAAAGGAACAGACCTTTCAATCTGCAAAAGGTAA 1805 0.4371 MLRTHIHIFSSFTVPLQSSRVRSSSAPTRRRLVKTAAPLEPNLKQLTSRIVQLTRRKQLRQILDEVEVAKRHFEKLNTIVMNAVVEACVRCGDIDSALRIFGEMKKRDGCGVDSVTYATLLKGLGEARRVDEAFELLETVENGTATGSPNLSAPLIFGLLNALIKIGDLRRANGLLARYGFVLREGGNFSVSVYNILMKGYINSGCPHTAINMLNEILRQGIMPDRHTYNILILACVESGKLDVAMQFFEEMKGNARKFVNVDLFPDIVTYTTMLKGFGQAKDLASVLKIVLEMKSRRELYIDRTAYTAIIDALLKCGSVKGALCIFGEILKQAGLNAKLRPKPHLYLSMMRTFAFLGDYDLVKKLHKRIWPDSAGTILLVAQEEADHLLMEAALNAGQVNVAVKTLTEIVSRWKGISWTSRGGMVAYRIEAMLGFSKSLFSPHLLPQISPSEPVENYMIQFEATQPLQGTIKLREVVMRFFDEAVVPIVDEWGSSMMRSPPPTVTTSTSVGHVVDLILEKRYQMVIIVNYTNSYATSPDTSRAVGVFTSEQLSRFISPVSQVKGTDLSICKR 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00541 573 Gene3D Tetratricopeptide repeat domain 155 259 IPR011990 GO:0005515
Pste8g00541 573 Pfam PPR repeat family 191 236 IPR002885 -
Pste8g00541 573 Pfam PPR repeat family 77 124 IPR002885 -
Pste8g00541 573 Gene3D Tetratricopeptide repeat domain 25 144 IPR011990 GO:0005515
Pste8g00541 573 PANTHER OS09G0431600 PROTEIN 20 571 IPR044781 -
Pste8g00541 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Pste8g00541 573 Pfam Pentatricopeptide repeat domain 258 296 IPR002885 -
Pste8g00541 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Pste8g00541 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 143 IPR002885 -
Pste8g00541 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 107 IPR002885 -
Pste8g00541 573 Pfam PPR repeat 306 332 IPR002885 -
Pste8g00541 573 SUPERFAMILY CBS-domain pair 468 557 IPR046342 -
Pste8g00541 573 NCBIfam pentatricopeptide repeat 193 225 IPR002885 -
Pste8g00541 573 NCBIfam pentatricopeptide repeat 227 253 IPR002885 -
Pste8g00541 573 NCBIfam pentatricopeptide repeat 81 113 IPR002885 -
Pste8g00541 573 NCBIfam pentatricopeptide repeat 115 138 IPR002885 -
Pste8g00541 573 NCBIfam pentatricopeptide repeat 269 297 IPR002885 -
Pste8g00541 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 297 IPR002885 -
Pste8g00541 573 Gene3D Tetratricopeptide repeat domain 260 435 IPR011990 GO:0005515
Pste8g00541 573 ProSiteProfiles CBS domain profile. 497 568 IPR000644 -
Pste8g00541 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 338 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00541 Pste-Chr8 2806659 2822597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00541 69 461 Glycosyltransferase AT1G05670 23.908 6.14e-15 76.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00541 8 2806659 2822597 Pste8g00541 8 2806659 2822597 ECH