Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00503 ATGTCCTCAAATCCAACCATGTATGAACCAAAAAATATCCTCATAACTGGAGCTGCTGGTTTCATAGCCTCCCATGTCACTACCAGATTGATTAACAAGTACCCTAGCTATAAAATTGTAGCTCTTGATAAGTTAGACTATTGCTCTACTTTCAAGAATTTACAATCATGTGCTTCATCACCTAAATTCAAATTCATCAAGGGTGATATAGCAACTGCTGATATTGTAAATCATATTCTAATAGAAGAGGAAATAGACACCATTATGCATTTTGCTGCTCAAACACATGTGGACAATTCATTTGGAAACTCTATGGATTTCACATACAACAATATCTATGGCACTCATGTGCTACTTGAAGCCTGTAGGGTCACCAATTGTGTCAGAAGGTTCATTCATGTTAGCACAGATGAAGTCTATGGTGAAACAGACTTAGATGCTAATATTGGAAACCATGAGACATCTCAGCTTCTACCAACCAATCCTTATTCTGCCACAAAAGCAGGTGCAGAAATGTTGGTCATGGCTTATCACAGGTCTTATGGTCTTCCAATTATAACTTCTAGAGGCAATAATGTTTATGGTCCAAACCAGTACCCAGAAAAGCTTGTTCCTAAATTCATTCTTCTTGCCATGAAGGGTGAGAAGTTGCCAATCCATGGAGATGGATCCAATGTGAGGAGCTACCTCCATTGTGGGGATGTGGCAGAAGCTTTTGATGTCATACTTCACAAAGGAGAAATTGGCCAAGTTTACAACATTGGCACTAAGAAAGAAAGGAGTGTGTTAGATGTGGCAGAGGAAATTTGCAAACTCTTCAAACTGAATCCTAGAGATGTTATTCAATTTGTTCAAGATAGGCCTTTCAATGATAAGAGATATTTTCTAGATGATCAGAAGCTCAAACAACTTGGTTGGGAAGAGAGAACTGTTTGGGAAGAAGGACTTAAGATGACAATTGATTGGTACAAAAAGAACCCTGATTGGTGGGGTGATGTATCCACTGCTTTAAACCCTCATCCACGTTTCTCAGCTATCAATCTCTCTGATGAAGCTCAATGGTCCTTCCAATATGGATACTCAAGGCTTGCAAGGTCATTTACTGAAGTTGGTAGAAAAAAGTTAGAGATTAAGTTCTTGATATATGGGAGAACAGGTTGGATAGGGGGGTTATTAGGAAAGCTTTGTGATGAAGAGAGAATTGATTGGGAATATGGGAGAGGAAGATTGCAAGATAGAAAATCACTTTTGGAGGATATAAGGAGGGTAAAGCCAACACATGTGTTGAGTGCTGCTGGTGTTACAGGAAGGCCTAATGTTGATTGGTGTGAGTCACATAAGGTTGAAACAATAAGGACTAATGTTGTGGGGACTTTGACACTAGCTGATGTTTGCAAGGAGCATGGCTTGTATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGATAAAGAGCATCCTCTAGGATCAGGCATTGGGTTCAAGGAAGAGGACATGCCAAATTTCATCGGTTCCTTTTATTCAAAGACCAAGGCCATGGTGGAGGATCTTCTAAAAAATTATGACAATGTCTGTACATTGAGAGTTAGAATGCCAATATCCTCAGATCTTAGCAATCCAAGAAACTTCATCACAAAGATTTCTCGTTACAACAAGGTGGTAAACATACCTAACAGCATGACAGTGCTAGATGAACTCTTACCCATATCCATTGAAATGGCTAAGAGGAACTTGAAAGGGATATGGAACTTCACCAACCCAGGAGTCATTAGCCACAATCAAATACTAGAAATGTATAGGGATTACATAGATCCAAAGTTTAAATGGGAGAACTTTGATTTGAAAGAACAAGCAAAGGTAATAGTTGCTCCTAGGAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAAAGAGTTCCCACATTTGTTGTCCATCAAAGATTCCATTATCAAGTTTGTGTTTGAGCCTAACAAGAAAACTTGA 1986 0.3877 MSSNPTMYEPKNILITGAAGFIASHVTTRLINKYPSYKIVALDKLDYCSTFKNLQSCASSPKFKFIKGDIATADIVNHILIEEEIDTIMHFAAQTHVDNSFGNSMDFTYNNIYGTHVLLEACRVTNCVRRFIHVSTDEVYGETDLDANIGNHETSQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVYGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLHCGDVAEAFDVILHKGEIGQVYNIGTKKERSVLDVAEEICKLFKLNPRDVIQFVQDRPFNDKRYFLDDQKLKQLGWEERTVWEEGLKMTIDWYKKNPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGYSRLARSFTEVGRKKLEIKFLIYGRTGWIGGLLGKLCDEERIDWEYGRGRLQDRKSLLEDIRRVKPTHVLSAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEHGLYMMNFATGCIFEYDKEHPLGSGIGFKEEDMPNFIGSFYSKTKAMVEDLLKNYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVISHNQILEMYRDYIDPKFKWENFDLKEQAKVIVAPRSNNEMDASKLKKEFPHLLSIKDSIIKFVFEPNKKT 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00503 661 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 7 342 - -
Pste8g00503 661 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 368 661 - -
Pste8g00503 661 CDD dTDP_GD_SDR_e 11 328 IPR005888 GO:0008460|GO:0009225
Pste8g00503 661 Gene3D - 370 661 - -
Pste8g00503 661 Gene3D - 13 317 - -
Pste8g00503 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 378 654 IPR036291 -
Pste8g00503 661 Gene3D - 204 326 - -
Pste8g00503 661 FunFam UDP-glucose 4,6-dehydratase 13 215 - -
Pste8g00503 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 334 IPR036291 -
Pste8g00503 661 CDD dTDP_HR_like_SDR_e 378 650 - -
Pste8g00503 661 Pfam GDP-mannose 4,6 dehydratase 14 319 IPR016040 -
Pste8g00503 661 Pfam NAD dependent epimerase/dehydratase family 407 543 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00503 Pste-Chr8 2608932 2611425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00503 12 323 Miscellaneous Gene Families AT1G02000 25.373 1.59e-20 92.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00503 8 2608932 2611425 Pste8g00503 8 2608932 2611425 ECH