Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00375 ATGACACCCTCAATTTGTTTTCTTCTCTTGTCCCTTCTGTTCTTTACATCCTCGACAACTGGTGATCTCCAACCTCATGAAGAGGGTTTCATCTCTGTGGTTGTATCTGACAAGGGTCTTGATTTTGCCAAGGATATTCTCATAGACCAAGCTATTGCCTCTATTCTTCAATCTCAGCTGCCACAGATTGAGAAGACTGTGCAAGTCCCACTTGTTGGAAAAGCCAAAGTGGTTCTTTCTGACATCACTATCAATGATATCCAAGTTAATTCTTCATCTGTTAATACAGGAGACACAGGCATTGCTCTTGTGATTTCAGGTGCCACTGCTGACTTGAGTTTGAACTGGAGGTACTCCGTTAATGATTTGCAAGTGGGACTTGCTGTGAATTTAAGGAATCAAGAAGGGACTCTTAAGTTGATTCTCCTGGATTCTGGATGTCATGTTAGAGATTTATCTATAAAGTTACATGGTGGAGCAGCTTGGCTTTACCAAGTGCTAGTAGATGCTTTTGCAGGAAATATAGCATCTGCAGTAGAAGAGGCAATTTCTAAGCAAATAAATGAGGGGATAGCAAGTCTTGACCTTTTATTGCAATCTCTTCCAAAGACCATCCCATTAGATGAAACTGCTGCTCTAAATATTTCTTTCGTGGACAATCCCGTTCTGACTAATTCTGCTATTGAATTAGAAATTAATGGTTTATTCGCAGCAAGAAATGAAGTTTTGGCACCTCAAGCTTACCACAGAGGACCAGATCTTTCTGTTTCCTGTGGTAGCCGTTCACCAAATATGTTAACAATTTCATTACATGAAAAAGTTTTCAAATCTGGTTCCTCGGTTTACTTCACTGCAGATAGTATGCAATGGATTATTGAAGAACTACCTGATCAGGACCTTTTGAATACTGCCGAATGGAAATTTCTTATTCCTCAATTATACAAGAAGTATCCAAATGATGACATGAATCTTAATATCTCTGTATCTTCTCCACCGGAAATACAAGTGACAAACAAAGATGTCGGTGTCAACATTTTCACAGATATAATAATTGATGTTCTGGAAGTTGGCGAAATCATACCTGTTGCATGCATCTCGGTGGATTTTAGTGCCTCTTGTGCTGTGGAGATTGTAGGAAACAATCTTGCTGGTTGGCTTAAATTGAGAAAGTTTTCCACACACTTGAAATGGAGTAAAATAGGGAAACTTCACATGAATCTGATTCAGTCCGTGACGTCAGCCGTCCTTAAAACCGTGCTAATACCATACCTGAACTCGCAGTTAATAAGGGGAATTCCACTACCAATTCTGAATGGTTTTGCCCTTGAGAATGCTCGTATATTGTATGCTCCTCCATGGATTACTGTGTGTAGTGATGTTTCTTTCTTAGGAGACAACTATCTCAAACAGTTACCAACTTATGCATCATAAACATGCTCTCGGAGATCTGTCTGCTTTGTGTACTGAGGTAACGAGCAACCTGTCAAAATGGCTATGAAAAATGAATGACATGAACATGCATACAAGTCCATTTCCTCAGCTTCGTGCGTGTACTCCATCATTGGTTTAGCTCTGGATTTTACCTTCTGTGAACCATAAGATTACATGAAAACTTTGCCATAGTGAAACATCCTTATTTGATTTGGAATGCCATGCACGCTCTTTACTATTGTAATGAGG 1680 0.3946 MTPSICFLLLSLLFFTSSTTGDLQPHEEGFISVVVSDKGLDFAKDILIDQAIASILQSQLPQIEKTVQVPLVGKAKVVLSDITINDIQVNSSSVNTGDTGIALVISGATADLSLNWRYSVNDLQVGLAVNLRNQEGTLKLILLDSGCHVRDLSIKLHGGAAWLYQVLVDAFAGNIASAVEEAISKQINEGIASLDLLLQSLPKTIPLDETAALNISFVDNPVLTNSAIELEINGLFAARNEVLAPQAYHRGPDLSVSCGSRSPNMLTISLHEKVFKSGSSVYFTADSMQWIIEELPDQDLLNTAEWKFLIPQLYKKYPNDDMNLNISVSSPPEIQVTNKDVGVNIFTDIIIDVLEVGEIIPVACISVDFSASCAVEIVGNNLAGWLKLRKFSTHLKWSKIGKLHMNLIQSVTSAVLKTVLIPYLNSQLIRGIPLPILNGFALENARILYAPPWITVCSDVSFLGDNYLKQLPTYAS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00375 476 PANTHER OS06G0309200 PROTEIN 6 472 IPR045897 -
Pste8g00375 476 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 225 IPR017943 GO:0008289
Pste8g00375 476 Gene3D - 38 199 - -
Pste8g00375 476 Pfam LBP / BPI / CETP family, N-terminal domain 39 193 IPR017942 GO:0008289
Pste8g00375 476 SMART bpi1_3 35 241 IPR017942 GO:0008289
Pste8g00375 476 Pfam LBP / BPI / CETP family, C-terminal domain 260 447 IPR001124 GO:0008289
Pste8g00375 476 Gene3D - 32 447 - -
Pste8g00375 476 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 227 462 IPR017943 GO:0008289
Pste8g00375 476 PIRSF Lipid_binding_protein 3 466 IPR030675 GO:0005615|GO:0008289
Pste8g00375 476 SMART bpi2_2 260 465 IPR001124 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00375 Pste-Chr8 1950851 1956617 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00375 8 1950851 1956617 Pste8g00375 8 1950851 1956617 ECH
Pste7g01357 7 12309421 12314810 Pste8g00375 8 1950851 1956617 PCT