LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g00354	ATGGGTCCCACTCCCCTTCCCCATATTGAGAGCAATAAGCAGAACTCTCTCTCTCTCTCTCTGTCTCTCTGGATTGCTGCTGGGATGAGGATACCAGGCGCTCTTTCTCGTGTTCTTACTGTCCTCTACTTCCTTTGTCTGGCCTCTGCTCAGAGATCTGCCTGGAACACTCTCTCTGGAGGTCCACCCTTGGTGGTGGCGCGAGGTGGATTTTCAGGAATATTGCCAGATTCCAGTGATGCTGCCTATAATTTGGCTGTCATAACATGTGGACCCGATGTCTACGCATGGTGTGATGTGCAATTAACTAAAGATGGAGTTGGGATATGCCAACCAGATATAAACCTTGCTAATTCCACTTACATTGCTTCCGTCTACCCTAATCAAACCACTAGTTACTTGATTAATGGTGTACCCACCCGCGGCTATTTTCCTCTTGATTATACCTTCAAGGACCTCGACGGTGTCCTCTTGACTCAGGGAGTTTACTCTCGATCCAACCTCTTTGATGGCAACCGTTTTCCAATTCTTAGGGTTGATGATATCGTTACATTAAGACAACAACCTAAAGGAATATGGTTAAATATTCAGCACGATGCATTCTACGCACGACACAATTTGAGTATGAGAAGCTTTGTCCTTTCAGCTTCTAGAAGAATAGTTTTCAGTTACATCTCATCACCTGAGGTTGGTTTTCTGAGAAGTATAACAACACGCTTCAACCCAAAAACAACAAAATTGGTCCTCAGGTTTATGGGACAGAGTGACGTAGAACCATCGACCAATCAGACCTATGGTTCTCTTCTAAAAAATCTAACATTCATCAAGACATTTGCTTCTGGAATTCTTGTTCCAAAGATATACATATGGCCTGTAGATGCAACTCTGTATCTACAACCACATACATCTTTGGTCTCAGATGCACATAAAGCGCGACTCGAAGTTTTTGCATCAGATTTTGTGAATGATGTTCCATCTAGCTTCAATTACAGTTATGATCCTCTTGCTGAGTACCTCCAATTCATAGACAATGGTGATTTCTCTGTTGATGGTGTGCTGTCTGATTTTCCCATAACTTCATTTGAAGCTATAGGTTGCTTTGCTCATCAAGGCACCAATGCTACAAAAAAAGATAATGCTTTGATTATCTCAAAATTTGGTGCAAGTGGAGATTATCCGGCTTGTACTAACTTAGCATATCAAAAGGCCATATCTGATGGTGTGGATGTTCTTGACTGTCCTGTTCAAATGTCTAAGGATGGAACACCATTTTGCTTAAACTCCATTGATCTTATAGAGAGTACAACAGTTGCCCAATCAAACTTCAGCAAATTTGCCATGACTATTCCTGAGATCAAATCTGGCAGTGGCATATTTGCATTCAACTTGACGTGGAATGATATAAAAAGCTTGACCCCCTCAATATTGAATCCTTTTGCAAAATACAGATTGTTCAGGAATCCAAAATCTAAGAATGCTGGGACATTGTTGACGTTATCTGATTTTTTGTCCTTAACAAAAAATCAAACCTCTCTATCAGGTGTCGCTATCATTGTTGAGCATGCAGCCTATCTTGCTGACAAGCAAAGATTAAGTGTGATTGATGCAGTCATCGACACTTTGCGCAAAGCAGGCTATGATAAACCTGGACCCCAAAAGGTTTATATTCAATCCTCTAATAGCTCTGTACTGCTGAAGTTCAAGGAGAAAACCAGTTATGAGCTTGTCTACAAGATTGACGAGACTGTTGGTGATGCTGCTAATGCTGCTGTTGAGGATATAAAACGCTTTGCTACTGCTGTGGTTGTCAGCAAGGACTCCGTATTACCTAATAATAATAAATTCCTGACAAGCTCTACGAAGATTGTGCCAAAGCTAAAAGCTGCTAACCTCTCTGTTTTTGTAGAAACATTCAGCAATGAATTTGTGTCTCAAGCATGGGATTTTTTCTCAGATGCTACTGTTGAGATAAACTCATTTCTGAACATTGAGGGAGCAAAAATTGACGGTATCATCACAGACTTCCCTAAAACTTCTGACAGATACAGAAGGAACAAATGCTTAAGTATGGGTAACAGCACACCCGTTTATATGGATCCTGTTCAACCAGGTGGTCTTTTTGGACTCATTACTAAAGATTTCTTACCCCCAGCTGAAGCTCCACTCCCACCCTTGACAGAAAATGAAGTGGCAGAGCCACCTATGCCTGCTGTTGCAAAAACAGCCCCAGCTTCCAGCCCGAATTCTGGAACCAAAGCACTTCCACCAGGAAATGCACAGCCTAAGGTCACTGTCTGCTTCTTCTTGTCCACTTTGGTTGTGTTTATAGCATCTCTTCTTCTGCTTTGA	2349	0.4172	MGPTPLPHIESNKQNSLSLSLSLWIAAGMRIPGALSRVLTVLYFLCLASAQRSAWNTLSGGPPLVVARGGFSGILPDSSDAAYNLAVITCGPDVYAWCDVQLTKDGVGICQPDINLANSTYIASVYPNQTTSYLINGVPTRGYFPLDYTFKDLDGVLLTQGVYSRSNLFDGNRFPILRVDDIVTLRQQPKGIWLNIQHDAFYARHNLSMRSFVLSASRRIVFSYISSPEVGFLRSITTRFNPKTTKLVLRFMGQSDVEPSTNQTYGSLLKNLTFIKTFASGILVPKIYIWPVDATLYLQPHTSLVSDAHKARLEVFASDFVNDVPSSFNYSYDPLAEYLQFIDNGDFSVDGVLSDFPITSFEAIGCFAHQGTNATKKDNALIISKFGASGDYPACTNLAYQKAISDGVDVLDCPVQMSKDGTPFCLNSIDLIESTTVAQSNFSKFAMTIPEIKSGSGIFAFNLTWNDIKSLTPSILNPFAKYRLFRNPKSKNAGTLLTLSDFLSLTKNQTSLSGVAIIVEHAAYLADKQRLSVIDAVIDTLRKAGYDKPGPQKVYIQSSNSSVLLKFKEKTSYELVYKIDETVGDAANAAVEDIKRFATAVVVSKDSVLPNNNKFLTSSTKIVPKLKAANLSVFVETFSNEFVSQAWDFFSDATVEINSFLNIEGAKIDGIITDFPKTSDRYRRNKCLSMGNSTPVYMDPVQPGGLFGLITKDFLPPAEAPLPPLTENEVAEPPMPAVAKTAPASSPNSGTKALPPGNAQPKVTVCFFLSTLVVFIASLLLL	782

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g00354	782	CDD	GDPD_SHV3_repeat_1	63	363	-	-
	Pste8g00354	782	Gene3D	Phosphatidylinositol (PI) phosphodiesterase	62	364	IPR017946	GO:0006629\|GO:0008081
	Pste8g00354	782	Gene3D	Phosphatidylinositol (PI) phosphodiesterase	379	682	IPR017946	GO:0006629\|GO:0008081
	Pste8g00354	782	SUPERFAMILY	PLC-like phosphodiesterases	380	682	IPR017946	GO:0006629\|GO:0008081
	Pste8g00354	782	FunFam	Glycerophosphodiester phosphodiesterase GDPDL3	61	363	-	-
	Pste8g00354	782	PANTHER	GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE	40	774	-	-
	Pste8g00354	782	SUPERFAMILY	PLC-like phosphodiesterases	62	362	IPR017946	GO:0006629\|GO:0008081
	Pste8g00354	782	ProSiteProfiles	GP-PDE domain profile.	380	683	IPR030395	GO:0006629\|GO:0008081
	Pste8g00354	782	Pfam	Glycerophosphoryl diester phosphodiesterase family	387	678	IPR030395	GO:0006629\|GO:0008081
	Pste8g00354	782	FunFam	Glycerophosphodiester phosphodiesterase GDPDL3	378	683	-	-
	Pste8g00354	782	CDD	GDPD_SHV3_repeat_2	380	682	-	-
	Pste8g00354	782	MobiDBLite	consensus disorder prediction	736	755	-	-
	Pste8g00354	782	ProSiteProfiles	GP-PDE domain profile.	63	364	IPR030395	GO:0006629\|GO:0008081

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g00354	Pste-Chr8	1887439	1891661	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g00354	52	782	Receptor kinase-like Gene Family	AT4G26690	55.677	0.0	833

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste8g00354	8	1887439	1891661	Pste8g00354	8	1887439	1891661	ECH
	Pste7g01378	7	12470417	12494547	Pste8g00354	8	1887439	1891661	PCT