Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g02379 TCCCTTCTTCAACCATTGAAAGTAGGGTTTTCATCCGTGTCTGCTATTGACATTCTGGATCTGCAGGAGATCGAGAATGTTCTGACGGACGTTAAAGCTGACAACGTTAAGGTGATACCAGTTCCCAAGCACTGCGATTGGGCCGATTTCATGGTACTCGCCACTGGCAGTTCCACTTGGCACGTCAAGAACATTGCTCAAGCCCTAATTTACAAGGCTAAGCAGAAACAGAGAGGAGTTGAGCGAATGATGCTACCGAGTTGGCAATGGCCATTGAGGAATGGTTACACTTGGTATGTCACTCTTGAAAGTCAGCACCCTCTTTCATTTTCAGGTTGTGTAGCAGTAGCAGCCATATCCACCACCACCACCTCTCACCATTTTTCATATCCTGAAACCGCAGCTCCTCCATCCTCTCCCAAACCCAAACACCCACAACACTTGCTCTCCCTTCTTCTTAGACACCCTTCTCAACGCCAACCTCTCCAACAAGTCCATTCTCACATTATCACCTCTGGCCTCTTTATCCATCCTGTTCACAACAACCCTACTTATTTACTCCTCTTCAACAATGTCATCCGCTGTTACTCCCTTGGCCCTTACCCCCACGAAGCTCTTCACTTCTTCACATACACCCAAAACTGCCACACTTTCTTGACATACCCTTCCCTTGACACCTTCTCTTTTACCTTCCTCTCCCACGCTGCTGCCAATCTAAACTGCTCTCGCTTTGGGACTCGACTCCATGCCCTCGTTTTCAAAGTGGGTTTTCATTTCCATGTTTATGTGCAAACTGGTTGTTGCAAATGTATTCAACAAGACGTGTTCTACCAAATGCCGCACAGAAACTTAATAACTTGGAATGTTTTTATTACTGGTTTGATTAAATGGGGTGAGGTAGAACTTGCTTGTTCTGTGTTTAATCAGATGCCTGCGCGGAGTGTAGTGTCATGGACTCTTGTTATTGATGGATACACACGCAGGAATCAGCCTATCAAAGCTTTAAGTTTGTTTATGGAAATGATTGAAGTTGATGGTATAGAACCTCTTGAAGTTACTCTTTTGACCATTTTCCCCAATTGCAAGGCTGGGAGGTTAGAAGAAGCTGAAAAGATAGCTTTACAGGTACCTCTTGAGGTTGCAAATGCTGATGTGGAGGACACTTACAGTAATGTTGAAATTGGTCAGAGGGTGACCAGGAGAATACTGGAGATGGAGAGAAGACACGGTGCGGATTATGTTCTTATGTCCAATATTCTTGTTGGTTTTGAGAGATTTAAGGATGCAGAGAAGTTAAGGGAAATGATAGATAAGAGATTTGCCTTTAAACTTCCTGGCTACAGTTTAGTCCATTTACCACTAGGCCGAAAAGCCTATTGGCATGTCATTGGTCTTTGCTCCAGCCATTCTAAATTAGCTCAAGTCATCATTCATCACATTGTGGTAAAACTTGTTGCAAAGTACTTCACACTTCATCTTTTTTCTAGATGCATACAAAATCTTACAAAATTATATTCTGATTTATGGTTCCTTTTGTCGGGATGTAGAAAGTGGTTACCATATTTTAGTGCACCTAATTATTGTTATCAATGTGGAAATATGACATCCATAATTGAAGTTGATGTTTGCAAGGGACACACATATTCATACAGTTCTTTTCCTGTCATTTTCCAAGTAAAGAGTAGCAAAGTGATAGTTCATGCACTTGATGAAAAGGCTAGAGCTTACTACAATTTGGAGGGTCTTTGGACCCTAGGGACAATTCAAAATGAACGTGATGAGCTTTCTTCTCTCTCTCTCGTTCACACTTATTCTCTGGCTTCTTACATTTACGCTTCTCGCGCCGTTTTCGGAACACTCATGGCTTCCATCGCCGGATCCAATTGCGTCGCCCTCCGAACCGCCTACTTAAGCGTCTCCGGTTACCGGAAAATTGGTCAGATTCGCCATTGGTCTCCGATTCTCACCAATCTCCGTCCCGTTTCCGGTATTCGCCACCGATCCATTACTCCGTTTAGCCCCTTCGATGTTCGAGCACAGGTTGCTACACTGGAGGAAGCCGGAACCGGAGCGACGCAGAAAGTGGAGGCGCCGGTGGTAGTGGTGACCGGAGCTTCCAGAGGTATTGGTCGAGCGATTGCACTGTCCTTAGGTAAAGCAGGTTGCAAGGGTCTGGTCAATTATGCAAGGTCATCCAAGGAAGCCGAGGAGGTTTCCAAAGAGGAGATCGAGAATGTTCTGACGGATGTTAAAGCTGACAACGTTAAGGTGATACCAGTTCCCAAGCACTGCGATTGGGCCGATTTCATGGTACTCGCCACTGGCAGGTCCACTTGGCACGTCAAGAACATTGCTCAAGCCCTAATTTACAAGGCTAAGCAGAAACAGAGAGGAGTTGAGCGAATGATGCTACCGAGTGTGGAAGGTCAAGCAGGAGGAAAGTGGCTCGTCATTGACTTTGGCAAAGTGATAGTTCATGCACTTGATGAAAAGGCTAGAGCTTACTACAATTTGGAGGGTCTTTGGACCCCAGGGACAATTCAAAATGAACGTGATGAGGACAGTAGGAGTGGCTTCCTACCGAAAGTTCTGCTTGGTGGAGGATTTACAAAAAGCTTTGGTGAAGGTTCGTCGGAAAAACAATTCGAAGAAACCTGCGAAAAAGAATGCGTACTTTCTTCTCTCTCTCTCGTTCACACTTATTCTCTGGCTTCTTACATTTACGCTTCTCGCGCCGTTTTCGGAACACTCATGGCTTCCATCGCCGGATCCAATTGCGTCGCCCTCCGAACCGCCGACTTAAGCGTCTCCGGTTACCGGAAAATTGGTCAGATCCGCCATTGGTCTCCGATTCTCACCGATCTCCGTCCCGTTTCCGGTATTCGCCACCGATCCATTACTCCGTTTAGCCCCTCCGATGTTCGAGCACAGGTTGCTACACTGGAGGAAGCCGGAACCGGAGCGACGCAGAAAGTGGAAGCGCCGGTGGTAGTGGTGACCGGAGCTTCCAGAGGTATTGGTCGAGCGATTGCACTGTCCTTAGGTAAAGCAGGTTGCAAGGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCCGAGGAGGTTTCCAAAGAGATTGAGGCATTTGGTGGGCAAGCTATTACATTTGGTGGAGATGTTTCAAATGAGGCGGATGTGGAGTCTATGATTAAAACTGCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGGAATAACTAGAGATGGCTTATTAATGAGAATGAAGAAATCTCAATGGCAGGATGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACACAGGGAAGGATAGTCAATATTGCATCAGTTGTTGGTTTGGTTGGCAATGTAGGACAAGCCAATTATAGTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAAACTGTTGCAAAGGAATATGCTAGCAGAAACATCACTGTTAATGCAGTTGCTCCAGGGTTTATTGCGTCTGATATGACTGCCAAGTTAGGACAAGAAATTGAGAAAAAGATTTTGGAGACTATCCCATTAGGAAGATATGGCCAACCAGAGGAAGTTGCTGGACTGGTGGAATTCTTGGCTCTTAATCAAGCTGCCAGTTACATCACTGGACAGGTATGA 3654 0.4537 SLLQPLKVGFSSVSAIDILDLQEIENVLTDVKADNVKVIPVPKHCDWADFMVLATGSSTWHVKNIAQALIYKAKQKQRGVERMMLPSWQWPLRNGYTWYVTLESQHPLSFSGCVAVAAISTTTTSHHFSYPETAAPPSSPKPKHPQHLLSLLLRHPSQRQPLQQVHSHIITSGLFIHPVHNNPTYLLLFNNVIRCYSLGPYPHEALHFFTYTQNCHTFLTYPSLDTFSFTFLSHAAANLNCSRFGTRLHALVFKVGFHFHVYVQTGCCKCIQQDVFYQMPHRNLITWNVFITGLIKWGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIKALSLFMEMIEVDGIEPLEVTLLTIFPNCKAGRLEEAEKIALQVPLEVANADVEDTYSNVEIGQRVTRRILEMERRHGADYVLMSNILVGFERFKDAEKLREMIDKRFAFKLPGYSLVHLPLGRKAYWHVIGLCSSHSKLAQVIIHHIVVKLVAKYFTLHLFSRCIQNLTKLYSDLWFLLSGCRKWLPYFSAPNYCYQCGNMTSIIEVDVCKGHTYSYSSFPVIFQVKSSKVIVHALDEKARAYYNLEGLWTLGTIQNERDELSSLSLVHTYSLASYIYASRAVFGTLMASIAGSNCVALRTAYLSVSGYRKIGQIRHWSPILTNLRPVSGIRHRSITPFSPFDVRAQVATLEEAGTGATQKVEAPVVVVTGASRGIGRAIALSLGKAGCKGLVNYARSSKEAEEVSKEEIENVLTDVKADNVKVIPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAKQKQRGVERMMLPSVEGQAGGKWLVIDFGKVIVHALDEKARAYYNLEGLWTPGTIQNERDEDSRSGFLPKVLLGGGFTKSFGEGSSEKQFEETCEKECVLSSLSLVHTYSLASYIYASRAVFGTLMASIAGSNCVALRTADLSVSGYRKIGQIRHWSPILTDLRPVSGIRHRSITPFSPSDVRAQVATLEEAGTGATQKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGGQAITFGGDVSNEADVESMIKTAVDAWGTVDVLINNAGITRDGLLMRMKKSQWQDVIDLNLTGVFLCTQGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQEIEKKILETIPLGRYGQPEEVAGLVEFLALNQAASYITGQV 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g02379 1217 Hamap Ribosomal silencing factor RsfS [rsfS]. 735 843 IPR004394 -
Pste7g02379 1217 NCBIfam pentatricopeptide repeat 316 349 IPR002885 -
Pste7g02379 1217 NCBIfam pentatricopeptide repeat 285 315 IPR002885 -
Pste7g02379 1217 PRINTS Glucose/ribitol dehydrogenase family signature 996 1013 IPR002347 -
Pste7g02379 1217 PRINTS Glucose/ribitol dehydrogenase family signature 1133 1152 IPR002347 -
Pste7g02379 1217 PRINTS Glucose/ribitol dehydrogenase family signature 1107 1123 IPR002347 -
Pste7g02379 1217 PRINTS Glucose/ribitol dehydrogenase family signature 1071 1082 IPR002347 -
Pste7g02379 1217 PRINTS Glucose/ribitol dehydrogenase family signature 1187 1207 IPR002347 -
Pste7g02379 1217 PRINTS Glucose/ribitol dehydrogenase family signature 1154 1171 IPR002347 -
Pste7g02379 1217 FunFam Mitochondrial assembly of ribosomal large subunit 1 738 855 - -
Pste7g02379 1217 Gene3D Beta Polymerase, domain 2 19 100 IPR043519 -
Pste7g02379 1217 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 1120 1148 IPR020904 GO:0016491
Pste7g02379 1217 CDD BKR_SDR_c 996 1217 - -
Pste7g02379 1217 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 996 1217 IPR036291 -
Pste7g02379 1217 SUPERFAMILY Nucleotidyltransferase 742 848 IPR043519 -
Pste7g02379 1217 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 694 753 - -
Pste7g02379 1217 Gene3D Beta Polymerase, domain 2 735 856 IPR043519 -
Pste7g02379 1217 Gene3D Tetratricopeptide repeat domain 188 463 IPR011990 GO:0005515
Pste7g02379 1217 Pfam Ribosomal silencing factor during starvation 23 78 - -
Pste7g02379 1217 Pfam Ribosomal silencing factor during starvation 742 842 - -
Pste7g02379 1217 NCBIfam ribosome silencing factor 741 842 IPR004394 -
Pste7g02379 1217 Pfam E motif 389 450 IPR046848 -
Pste7g02379 1217 Pfam short chain dehydrogenase 699 742 IPR002347 -
Pste7g02379 1217 Pfam PPR repeat 316 343 IPR002885 -
Pste7g02379 1217 Pfam PPR repeat 285 313 IPR002885 -
Pste7g02379 1217 SUPERFAMILY Nucleotidyltransferase 22 81 IPR043519 -
Pste7g02379 1217 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Pste7g02379 1217 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 995 1164 - -
Pste7g02379 1217 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 1071 1082 IPR002347 -
Pste7g02379 1217 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 1113 1121 IPR002347 -
Pste7g02379 1217 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 1133 1152 IPR002347 -
Pste7g02379 1217 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 694 777 IPR036291 -
Pste7g02379 1217 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 994 1217 - -
Pste7g02379 1217 Gene3D - 994 1217 - -
Pste7g02379 1217 Pfam Enoyl-(Acyl carrier protein) reductase 1001 1217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g02379 Pste-Chr7 22534654 22558592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g02379 620 741 Acyl Lipid Metabolism Gene Families AT1G24360 50.000 5.38e-28 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g02379 7 22534654 22558592 Pste7g02379 7 22534654 22558592 ECH