Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g02296 GAGGGAAGAGATTGGTTGTGGTTGTAGTTGTAGCTGCTTAGTGCTTATGGGTTTAATTGAAGGAAAAAGATATGGCGGCATAGACACAAAGGATGGATGAGGAGGCACCGAAACCCGTGGTGGTGATCACAGGATGCTCGGCGGGAGGGATAGGCCACGCGCTTGCTGGCGCGTTTGCGGAGAAGAAGTGCAGAGTGGTGGCCACCAGCAGGTCGCGGTCGACCATGGCTGAGCTGGAACACGACCACAGGTTTTATTTGGAAGAATTGGATGTCCAGTCCGATGAGAGCGTGCGCAGAGTGGTTGACGCTGTTGTCGATAAGTACGGATGCATCGACATCCTTGTTAACAACGCCGGTGTCCAGTGCGTTGGCCCACTCGCCGAGGTTCCTCTCTCTGCCATTCAAAACACTTTTGACACCAACGTTTTCGGTTCCTTGAGAATGGTTCAGGCGGTTGTTCCTCATATGGCAAGTAGGAAAAAGGGGAAGATTGTCAATATTGGTAGTGTTGCTGCCTTGGCTTCTGGACCTTGGTCAGGCACTTATACAGCTTCTAAAGCCGCTCTTCATGCTTTGACAGATACATTAAGATTGGAACTTGGACATTTTGGAATTCATGTTGTTAATGTCGTCCCCGGAGCTATCAAATCAAATATAGGAGATTCTGCCATAGCCAGCTACAACCGCATGCCAGAATGGAAATTATTTAAGCCTTTTGAAGCAGCAATCCGTGACAGAGCCTACTTTTCTCAGAAGGCCAAATCGACCCCTACAGATGAGTTTGCTAAAAACACTGTGGATGCTGTCCTTAAGGAGAAACCGCCTGCATGGTTCACCTATGGGCATTACTCTACTGTCATGGCTATCGTCTACCATTTACCAATCTCTGTTAGAGATTTTCTTTTGAAGAAAGCAATGAAAAGCTGAGTCTAAGTTGGGTGGTGCATCTATCTTTCCATATGTATGTTGATGGGCAAGGACTCTCTACAAAGCATTTTACTTTACTTTACGTATGGCAACAGTAGAGATATCATTAGGGGATGTCTTGTTAGGGCTTAATTGTATTTAATTCCATTTTATCATATTCTAGTGACAGTTTTTGGATAAAATTTCACCCAACCGAGGATATAGTTTCTTGAGTGTGCGTGAAAGTGAAACCTTGTCATTCTTTGAACATGGATCAAC 1187 0.4541 MDEEAPKPVVVITGCSAGGIGHALAGAFAEKKCRVVATSRSRSTMAELEHDHRFYLEELDVQSDESVRRVVDAVVDKYGCIDILVNNAGVQCVGPLAEVPLSAIQNTFDTNVFGSLRMVQAVVPHMASRKKGKIVNIGSVAALASGPWSGTYTASKAALHALTDTLRLELGHFGIHVVNVVPGAIKSNIGDSAIASYNRMPEWKLFKPFEAAIRDRAYFSQKAKSTPTDEFAKNTVDAVLKEKPPAWFTYGHYSTVMAIVYHLPISVRDFLLKKAMKS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g02296 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 IPR002347 -
Pste7g02296 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 IPR002347 -
Pste7g02296 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 IPR002347 -
Pste7g02296 278 FunFam NADPH-dependent 1-acyldihydroxyacetone phosphate reductase 6 258 - -
Pste7g02296 278 Coils Coil 45 65 - -
Pste7g02296 278 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 139 167 IPR020904 GO:0016491
Pste7g02296 278 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 7 277 - -
Pste7g02296 278 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Pste7g02296 278 PRINTS Glucose/ribitol dehydrogenase family signature 152 171 IPR002347 -
Pste7g02296 278 PRINTS Glucose/ribitol dehydrogenase family signature 173 190 IPR002347 -
Pste7g02296 278 PRINTS Glucose/ribitol dehydrogenase family signature 126 142 IPR002347 -
Pste7g02296 278 PRINTS Glucose/ribitol dehydrogenase family signature 79 90 IPR002347 -
Pste7g02296 278 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 265 IPR036291 -
Pste7g02296 278 CDD 17beta-HSD-like_SDR_c 9 254 - -
Pste7g02296 278 Pfam short chain dehydrogenase 9 192 IPR002347 -
Pste7g02296 278 Gene3D - 8 264 - -
Pste7g02296 278 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g02296 Pste-Chr7 21281992 21284519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g02296 3 189 Acyl Lipid Metabolism Gene Families AT1G24360 31.606 1.16e-17 79.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g02296 7 21281992 21284519 Pste7g02296 7 21281992 21284519 ECH