Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g02062 GGCTACAGATGCAAACGACGAAGGCTCAGAAGCCACTGCAGAGAGTTGTGGAAGACAAGTTTATTTCGCTGTTACGATCATGCGGAACGTGCGCGCAACTGCAGCAGATCCAGGCCCAAGTAGTGACCCACGGGCTCGAGGGAAACGATTACGTCACCCCGAGTTTCATCACCGCGTGCGCGCGCCTCACCGGAATGGGTCACGCTCGAAGCGTGTTCGATAAAACGGCGCAACGGAACGGCGCCACGTGGAACGCCATGTTCCGCGGCTACGGCCAAGCGGAGCGCCACCTCGAAGTCGTGGTTTTGTTCGGGCAGATGCACCGCGGCTGCGCGTCGCCGAACTGCTTCACGTTTCCGATGATAGTGAAGTCTTGCGCGCAGGCGAATGCGGTGAAGGAAGGGGAGCAGGTTCATTGCGTTTTGGCCAAACGCGGTTTTAAGTCGAACGCGTTTGTGGGAAGTGCTTTGATTCATATGTATTCGGTGAGAGGGGGAGCGGGCGTTGGGGATGCTTACAAGGTGTTCGGTGAAATGCGTGAGAAGAATGTTTTCGCTTGGACTGCTATTATTGCCTGCCACGTGGCGTGCCGTGACATGGTTTCTGCTCGGAGGCTTTTCGACGTGGCGCCGCAGCGTGACGTGGTGCTGTGGAACGTCGTCGTTTCGGGGTACATTGAATTGGGGGAAATGGTGGCTGCGAGAGCGCTGTTTGATAAAATGCCGAACCGGGATGTGATGGCGTGGAACACTTTGTTGAATGGTTACGCCTGTAATGGTGATGTTGAATCGTTTGAGAAACTGTTTGAGGAAATGCCTGTGAGGAATGTTTATTCTTGGAATGGGTTAATTGGAGGGTATATTCGGAATGGGCTCTTTAGAGAAGCTTTGGAGTCTTTTAAACGGATGTTGGTGTTGGCAGAAGCATCTGAAAGATCCAATCAATTCCACTTCCACGGGCCAAAATCAAATTCATTAAATTCTGGATCTGTTTTGAAAATCCAGTCTAAGGCCTTTGGAATAATAAAAATCAAATGGGCAAAATCATCGACTCCTCCATTCTGCATCTGCTGCTTGTCAAAATCAGTTATGTTTTTGGTTATGAACAACATTCAGTTTTGCCAATTGGAGTTGTTGCATTTACACACCATTTTTGAGACACATATGGTAATGGTTGATCTAACATTAGCAACAAGGAAAAAATTTACTTCCCTGTTGGATGCTGGCTATAGTTGTATCTTATTACCTGATGGAGTGCAAGAGGCATTTCCCATGGAACATGCATTTGCCGACTCTCTCAAAACTGTTAAACTAAAACGTAGCTGTTCAAATGTCTACAACTGGTGGAAACCAGGTGGGAAGTTAATTCTGAATTTTGCGAGGGCTATCAAGTTCACTCCAATATACTTTTGGGGAATTTTCAGCGAATTAAGCTTAAAATATTTGCTGAGAATGTTATTCGAAAAGGTGGATTCAAATAATGTTTTGCAGGATTGCCTTTTACAGTCAGCTTTTATCATTTTTTTATATATACAACTTACAAGCTTTATATATAGAAATAGAATGGAATCATTGATTTGGGAACAACAGTCATTTGACTGGTGTACCAGTGTGAAAACTAATCTCCGATACCATTTAAACGTCCTGCATGTGGTAGTGGGCAGACCAATTGAGCTTGAGAAAAATCCCGCACCCACTCCTGAGGAGGTTGCGAAAATACATAGCCAGTTTGTTGAAGCACTTCAAGATCTATTTGAGCGACACAAAGCTCGAGCTGGATATCCTAATCGAGTTGAGAATTGTTTGATAAGGTCATAACTTCGACTGTTTCACCCATATTTTCATGGGGTTATTTACACTTATCTCCCCAAAGGTTAGGCTTTATTTGGGAGTTTTGAAGATAGAGTGGAGTGAGTGGTTCATGATTAATTAGATTTGGAAATGGGAGAGGTAAAATAATACTGGTGATTGGTTGAAAAGGGAGCTATATCTGTTGTTTTAAAAGTTACAGTGATAATCGTGTAAATTATAAATTTAACTTCCAATTATAAGTCAG 2055 0.4433 MQTTKAQKPLQRVVEDKFISLLRSCGTCAQLQQIQAQVVTHGLEGNDYVTPSFITACARLTGMGHARSVFDKTAQRNGATWNAMFRGYGQAERHLEVVVLFGQMHRGCASPNCFTFPMIVKSCAQANAVKEGEQVHCVLAKRGFKSNAFVGSALIHMYSVRGGAGVGDAYKVFGEMREKNVFAWTAIIACHVACRDMVSARRLFDVAPQRDVVLWNVVVSGYIELGEMVAARALFDKMPNRDVMAWNTLLNGYACNGDVESFEKLFEEMPVRNVYSWNGLIGGYIRNGLFREALESFKRMLVLAEASERSNQFHFHGPKSNSLNSGSVLKIQSKAFGIIKIKWAKSSTPPFCICCLSKSVMFLVMNNIQFCQLELLHLHTIFETHMVMVDLTLATRKKFTSLLDAGYSCILLPDGVQEAFPMEHAFADSLKTVKLKRSCSNVYNWWKPGGKLILNFARAIKFTPIYFWGIFSELSLKYLLRMLFEKVDSNNVLQDCLLQSAFIIFLYIQLTSFIYRNRMESLIWEQQSFDWCTSVKTNLRYHLNVLHVVVGRPIELEKNPAPTPEEVAKIHSQFVEALQDLFERHKARAGYPNRVENCLIRS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g02062 602 NCBIfam pentatricopeptide repeat 275 301 IPR002885 -
Pste7g02062 602 NCBIfam pentatricopeptide repeat 213 242 IPR002885 -
Pste7g02062 602 NCBIfam pentatricopeptide repeat 80 112 IPR002885 -
Pste7g02062 602 NCBIfam pentatricopeptide repeat 245 273 IPR002885 -
Pste7g02062 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Pste7g02062 602 Pfam PPR repeat 245 273 IPR002885 -
Pste7g02062 602 Pfam PPR repeat 80 106 IPR002885 -
Pste7g02062 602 Pfam PPR repeat 213 242 IPR002885 -
Pste7g02062 602 Pfam PPR repeat 275 301 IPR002885 -
Pste7g02062 602 Gene3D Tetratricopeptide repeat domain 209 312 IPR011990 GO:0005515
Pste7g02062 602 Pfam Diacylglycerol acyltransferase 545 593 IPR007130 GO:0008374
Pste7g02062 602 FunFam Pentatricopeptide repeat-containing protein At2g34400 6 130 - -
Pste7g02062 602 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 242 304 IPR046960 GO:0003723|GO:0009451
Pste7g02062 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 111 IPR002885 -
Pste7g02062 602 Gene3D Tetratricopeptide repeat domain 15 179 IPR011990 GO:0005515
Pste7g02062 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 241 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g02062 Pste-Chr7 18924117 18929175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g02062 8 315 Glycoside Hydrolase AT3G49170 25.519 9.21e-22 98.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03478 1 16253260 16260834 Pste7g02062 7 18924117 18929175 PCT