Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01530 TTTCAGGTAAAAAAAAAAAACGAAAACACTAACCTCTCTTATTCGTCCTGTTCCACTGTCGTCACACACTGCTCACTACCATCACAGTTACTGGGAATCTTTCTACTCAAGCCTGAGAAAAGTGCCTTCAGATTCGTTGCTTCCACCATGGAGGAACAAATCCCGTTTAAGAATCTCCATAGCCGAGAGTATTCAGGTCACAAGAAGAAGGTGCACTCTGTCGCGTGGAATTGCACCGGCACAAAACTTGCTTCTGGCTCTGTGGACCAAACTGCGCGAATATGGCATATTGAGCCACATGGGCATGGTAAGGTCAAAGATATTGAATTGAAAGGTCACACTGATAGTGTGGATCAGCTATGCTGGGACCCCAAACATGCAGATCTGATTGCAACTGCATCGGGTGACAAGACTGTTCGTCTGTGGGATGCTCGCAGTGGAAAATGCTCTCAACAGGCAGAACTTAGTGGGGAGAATATCAACATCACTTACAAACCTGATGGGACTCATGTAGCTGTAGGTAACAGGGATGATGAATTAACAATATTGGATGTTCGGAAGTTCAAACCAATTCATAGGCGCAAGTTCAATTATGAGGTAAATGAGATTGCTTGGAACATGACGGGTGAGATGTTTTTTCTAACAACAGGAAACGGAACTGTGGAAGTACTGTCTTACCCATCTCTTCGACCTCTTGATACCCTCATGGCTCATACAGCCGGTTGTTATTGCATTGCAATTGATCCAATAGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCCTAGTCAGCCTGTGGGATATCTCTGAGATGCTCTGTGTGCGTACCTTCACAAAGCTGGAATGGCCTGTCCGGACAATTGGCTTCAATTATACCGGAGATTTCATTGCTTCTGCAAGTGAAGACTTGTTCATTGATATTTCAAATGTTCAAACTGGAAGAACAGTGCATCAAATTCCTTGTAGAGCTGCTATGAACAGTGTTGAGTGGAATCCTAAATACAATTTACTTGCATATGCTGGCGATGACAAGAACAAGTATCAGGCTGATGAAGGTGTTTTTCGTATATTTGGTTTTGAAAATGCTTAGCATTTGGCAGAGGCATCATTTTTACTAATATTTGAGAATGCAAACAAAGGGAAGGGGATCGTTATGTTTTTTCTGAATGCGTACGGCTTGGTTATGCAGTACTGTCACTGAGGTCTGAGGCTAATGGGTGTTGATTTGTAAAATCTGAATGAGTTTGATCATGTATCATTAATCTTTGGGAAGAGGGAAATTCATAGATATGAATTGGATAAAAAATGATTTTGTTTTTCATTTTTTAAGGAAAAGTGAGAATTCTTTAATTTTGTATGTCAGAGATTGTGTTAACACTTAAATGTGATTATTTGAATTTTTTTATATGG 1409 0.4053 FQVKKKNENTNLSYSSCSTVVTHCSLPSQLLGIFLLKPEKSAFRFVASTMEEQIPFKNLHSREYSGHKKKVHSVAWNCTGTKLASGSVDQTARIWHIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDPIGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIGFNYTGDFIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFENA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01530 362 ProSitePatterns Trp-Asp (WD) repeats signature. 130 144 IPR019775 -
Pste7g01530 362 SMART WD40_4 187 225 IPR001680 GO:0005515
Pste7g01530 362 SMART WD40_4 312 350 IPR001680 GO:0005515
Pste7g01530 362 SMART WD40_4 103 143 IPR001680 GO:0005515
Pste7g01530 362 SMART WD40_4 57 96 IPR001680 GO:0005515
Pste7g01530 362 SMART WD40_4 228 267 IPR001680 GO:0005515
Pste7g01530 362 SMART WD40_4 270 309 IPR001680 GO:0005515
Pste7g01530 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Pste7g01530 362 SUPERFAMILY WD40 repeat-like 57 344 IPR036322 GO:0005515
Pste7g01530 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 64 98 IPR001680 GO:0005515
Pste7g01530 362 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Pste7g01530 362 PRINTS G protein beta WD-40 repeat signature 83 97 IPR020472 -
Pste7g01530 362 PRINTS G protein beta WD-40 repeat signature 130 144 IPR020472 -
Pste7g01530 362 Gene3D - 196 358 IPR015943 GO:0005515
Pste7g01530 362 PANTHER THO COMPLEX SUBUNIT 3 THO3 51 359 IPR040132 GO:0006406
Pste7g01530 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Pste7g01530 362 FunFam THO complex subunit 3 224 358 - -
Pste7g01530 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 64 98 - -
Pste7g01530 362 CDD WD40 62 305 - -
Pste7g01530 362 Gene3D - 10 195 IPR015943 GO:0005515
Pste7g01530 362 FunFam THO complex subunit 3 50 214 - -
Pste7g01530 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 110 148 - -
Pste7g01530 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 110 152 IPR001680 GO:0005515
Pste7g01530 362 Pfam WD domain, G-beta repeat 61 95 IPR001680 GO:0005515
Pste7g01530 362 Pfam WD domain, G-beta repeat 109 143 IPR001680 GO:0005515
Pste7g01530 362 Pfam WD domain, G-beta repeat 231 267 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01530 Pste-Chr7 14049715 14054200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01530 200 358 Miscellaneous Gene Families AT5G08390 23.125 6.72e-13 68.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01530 7 14049715 14054200 Pste7g01530 7 14049715 14054200 ECH