Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00635 ATGAGTGGCTTCAATTTCAGGGGCTTCACATACATGTTTCTCATAGCATTTCTCATCTGGTCTTCCAACTTTGAAGCCTGCATTGCAAGAAGAGGAAAGCACTGGAGGCAAAGCAGAGATGTCTCAGCTTCTGTGTATAAGAAAAAGGGGAAAAGCTATGGCAATAGTCACAACAAACATTTTGGTGGAGGAGGATCAAAAACAAAGCCTCCATCACACAAAAGCACCCCAACATTACCAAAGCCTCCATCACATAAAAACATTCCCTCACCAACATATCCACCACCACCACCAAATGATGATACCCCCACAACACCCCACCAAAAGCTTACAATGGCTTTTCAAGCTGCCTGGGCTGAAGCTTGCAAAGTAGAGTCATCAACTATGCTCATTCCAGAAGACTACATCTTCTTTGTGGGGCCTATTTCATTCTCAGGCCCGTACTGTAAACCCAACATCATTTTCCAGCTTGATGGCACCATTGTTGCACCCACAAGCCCTAATGCATGGGGCAAAGGGTTACTACAGTGGTTGGAATTTACCAAGTTGGTGGGAATTACCATTCAAGGAAATGGAATCATTGATGGAAGAGGCTCTGTGTGGTGGCAAGACAACCCATATGATGATCCTATAGATGATGAAGAAAAGCTTATAGTCCCTTTGAACCACACATCACGAACCCCCCCACTACCGATTCAAAGTGAGGTGGGAGGAAAAATGCCATCCGTCAAGCCAACTGCACTGCGGTTCTATGGGAGTTTTAGTCCAACAGTTACAGGCATAACAATTCAAAATAGTCCACAATGCCACCTCAAATTTGACAACTGTAATGGGGTCATGGTTCATGGTGTGACCATATCATCTCCTGGGGACAGTCCTAACACAGATGGAATTCACCTTCAGAACTCCAAAGATGTATTGATATATGGCAGCTCCATGGCCTGTGGAGATGACTGTATTTCAATACAAACTGGATGCTCAAACGTATATGTACACAATGTCAACTGTGGACCAGGGCATGGAATAAGCATCGGAAGTCTAGGAAAGGATAATACCAGAGCCTGTGTCTCAAATATTACAGTCAGGGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACGTGGCAGGGTGGATCAGGCTCTGTCCAAGGAGTACTATTCTCAAATATACAAGTTTCTGAAGTTCAACTCCCAATTGTGATTGATCAATTCTACTGTGATAAAAGAACCTGCAAAAACCAAACATCAGCTGTGTCTCTTGCTGGAATCAACTATGAAAGAATAAGAGGGACATACACAGTTAAGCCAGTTCACTTTGCCTGCAGTGATAGCCTTCCTTGTGTGGATGTTTCTCTAACAGGTGTTGAGTTAAAACCAATTCAAGAACAATACCATCTATACGATCCTTTCTGCTGGGAGACTTATGGTGAACTGAAAACTCCAACAGTCCCACCAATTGGTTGTCTACAGATTGGGAAGCCAACAAACAATCGGATTCAGACAGATCATGATTTATGTTGA 1530 0.4327 MSGFNFRGFTYMFLIAFLIWSSNFEACIARRGKHWRQSRDVSASVYKKKGKSYGNSHNKHFGGGGSKTKPPSHKSTPTLPKPPSHKNIPSPTYPPPPPNDDTPTTPHQKLTMAFQAAWAEACKVESSTMLIPEDYIFFVGPISFSGPYCKPNIIFQLDGTIVAPTSPNAWGKGLLQWLEFTKLVGITIQGNGIIDGRGSVWWQDNPYDDPIDDEEKLIVPLNHTSRTPPLPIQSEVGGKMPSVKPTALRFYGSFSPTVTGITIQNSPQCHLKFDNCNGVMVHGVTISSPGDSPNTDGIHLQNSKDVLIYGSSMACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRTCKNQTSAVSLAGINYERIRGTYTVKPVHFACSDSLPCVDVSLTGVELKPIQEQYHLYDPFCWETYGELKTPTVPPIGCLQIGKPTNNRIQTDHDLC 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00635 509 ProSitePatterns Polygalacturonase active site. 333 346 IPR000743 GO:0004650|GO:0005975
Pste7g00635 509 MobiDBLite consensus disorder prediction 46 107 - -
Pste7g00635 509 FunFam polygalacturonase At1g48100 106 494 - -
Pste7g00635 509 PANTHER - 110 479 - -
Pste7g00635 509 SUPERFAMILY Pectin lyase-like 111 508 IPR011050 -
Pste7g00635 509 SMART pbh1 303 324 IPR006626 -
Pste7g00635 509 SMART pbh1 326 346 IPR006626 -
Pste7g00635 509 SMART pbh1 183 204 IPR006626 -
Pste7g00635 509 SMART pbh1 356 377 IPR006626 -
Pste7g00635 509 SMART pbh1 385 406 IPR006626 -
Pste7g00635 509 SMART pbh1 276 302 IPR006626 -
Pste7g00635 509 Gene3D - 102 497 IPR012334 -
Pste7g00635 509 MobiDBLite consensus disorder prediction 75 103 - -
Pste7g00635 509 Pfam Glycosyl hydrolases family 28 125 205 IPR000743 GO:0004650|GO:0005975
Pste7g00635 509 Pfam Glycosyl hydrolases family 28 243 461 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00635 Pste-Chr7 5892821 5899258 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00635 4 509 Glycoside Hydrolase AT1G60590 60.650 0.0 653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g00635 7 5892821 5899258 Pste7g00635 7 5892821 5899258 ECH