Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00371 ATGGTGAAGAACATAACCCTCAAAGGTCCTTGCAATGCCACACAAATTAATATTCAGCTTCAAGGAAAAATAGTTGCACCTTCCAAGGATGCATGGGAAAAAGGTGTCACAATTGAAGATAATTCGTTTTTGATTATGATCTCTCATGTAAATGGTCTCGCAGTTGATGGAACTGGAGGACAAATTGATGGGTTGGGTTCTGATTGGTGGAAATGCCGTACTTGTCCACGACCTAAGGTCATTAATTTTGAAAGTTGTAATGATGTTAAGGTTAATAATCTTACCATAACTAATAGTCCAAGAGCTCACATATCAGTAGATTATTGTAAGGGTGCCATATTTTCCAATATCAGTATTTATGCCCCTGGTGACAGTCCCAACACCGATGGATTTGACATTCATGGTTCCAGTGATGATTGTATTGCCATCAATGGTGGCTGCTCATACATCAATGTTACTGGGGTTTTTTGTGGACCAGGCCATGGAATAAGCGTTGGCAGCCTTGGTAGAAACGGTGCTAATGATACAGTGGAACAAGTTTATGTAAGAAATTGCACCTTCAATAACACTCAAAATGGAGCAAGAATCAAGACATTTGAGAATGGAGGAATCGAAGTGAGTGATGTGATATTTTGTGGGTTTCATGGAACATCTGCAAAGGATTTAGCTATTAACTTAGCTTGCAGCTCATCAGGTTGTTTCAACATTGTATTGGATAATATTGAGATTGTCTCTTCATTACCAGGAAAGCCTGCTTATTGTTCATGCAGTAATGCCCATGGAACATCTACATCTACTGAACCAAGTTGTTCTAACTGCTTAATGAAATGA 831 0.3887 MVKNITLKGPCNATQINIQLQGKIVAPSKDAWEKGVTIEDNSFLIMISHVNGLAVDGTGGQIDGLGSDWWKCRTCPRPKVINFESCNDVKVNNLTITNSPRAHISVDYCKGAIFSNISIYAPGDSPNTDGFDIHGSSDDCIAINGGCSYINVTGVFCGPGHGISVGSLGRNGANDTVEQVYVRNCTFNNTQNGARIKTFENGGIEVSDVIFCGFHGTSAKDLAINLACSSSGCFNIVLDNIEIVSSLPGKPAYCSCSNAHGTSTSTEPSCSNCLMK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00371 276 ProSitePatterns Polygalacturonase active site. 154 167 IPR000743 GO:0004650|GO:0005975
Pste7g00371 276 SMART pbh1 86 108 IPR006626 -
Pste7g00371 276 SMART pbh1 177 198 IPR006626 -
Pste7g00371 276 SMART pbh1 109 135 IPR006626 -
Pste7g00371 276 SMART pbh1 147 167 IPR006626 -
Pste7g00371 276 Gene3D - 1 275 IPR012334 -
Pste7g00371 276 PANTHER - 203 262 - -
Pste7g00371 276 Pfam Glycosyl hydrolases family 28 2 201 IPR000743 GO:0004650|GO:0005975
Pste7g00371 276 SUPERFAMILY Pectin lyase-like 2 272 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00371 Pste-Chr7 3554495 3558963 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00371 1 270 Glycoside Hydrolase AT5G17200 37.026 6.25e-61 197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g00371 7 3554495 3558963 Pste7g00371 7 3554495 3558963 ECH