Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00266 GCTATATTTTATTTCTGTCTCTCACAATTTCTTTCTCTCACTTATTCCGAAAAACCATGGCCTTCTGTGGTACTAGTACTTTTCTTAAGCCAAACTATTCTATGTCCCCATGCCACAAACCAAAAGTTCCAAATCGGTACCATGATTGCAGAAACAAGTTCTCTGTGAGAGTTTCAGCAAGTGGCTCAAGTGATGAAGAGAGGACTATTATAAAGAAAGAGAAAGATGGGTGGAAGATCAATTTCTCAGGAGAAAAACCAGCAACACCATTGTTGGACACAGTCAACTACCCAATCCACATGAAGAATCTGTCCACACAGGAGCTTGAGCAACTTGCAGCAGAGTTGAGGGCAGATATTGTACATAGTGTGTCAAACACTGGTGGGCATCTTAGCTCAAGCCTGGGAGTGGTGGAGTTAGCAGTGGCTTTGCATCATGTTTTCAACACCCCTGAAGACAAAATTATATGGGATGTTGGCCATCAGGCATACCCTCACAAGATTCTCACAGGAAGAAGGTCCAGGATGCACACCATCAGGAAGACTTCAGGGCTAGCAGGTTTCCCTAAAAGGGATGAGAGTGTTCATGATGCTTTTGGTGTTGGTCACAGCTCTACAAGCATATCTGCTGGTCTTGGCATGGCTGTTGCACGAGATCTATTGGGAAAGAAGAACAGCATCATTTCAGTGATTGGAGATGGCGCATTAACTGCAGGCCAAGCTTATGAGGCAATGAACAATGCAGGGTTCCTTGATACTAACATGATAGTTGTACTTAATGACAACAAACAAGTCTCTTTACCAACTGCTACACTTGATGGGCCTGCAACTCCAGTTGGAGCTCTCAGCAGTGCTCTAAGCAAAATTCAAGCTAGTGCAGAATTCCGCAAACTCAGAGAAGCTGCAAAAAACATCACAAAGCAAATAGGAGGACAAACACACGAGGTTGCAGCAAAAGTAGATGAGTATGCAAGAGGCATGATCAGTGCTTCTGGCTCTACATTTTTTGAAGAGCTTGGCTTATATTACATAGGTCCTGTTGATGGTCATAACATTGAAGATCTGGTCACCATCTTTGAAAAAGTAAAAGCAACACCTGCCCCAGGTCCAGTTTTGATTCACATTGTGACAGAAAAAGGGAAGGGATACCCTCCAGCAGAAAAAGCTTCTGATAAAATGCACGGTGTTGTCAAGTTTGATCCAAAAACAGGTCACCAGTTAAAGGCAAAATCCTCCACACTTTCATACACCCAATACTTTGCTGAATCTTTGATAAAGGAAGCTGAATCTGACAAGAAGATAGTGGCGATTCACGCAGCAATGGGGGGTGGAACAGGCCTAAATTATTTCCATAAGAAGTTTCCCGAGCGTTGTTTCGATGTGGGGATAGCTGAACAACATGCTGTAACATTTGCAGCTGGTTTAGCTGCTGAAGGCCTCAAGCCATTTTGTGCCATTTATTCTTCATTCCTACAACGTGGATATGATCAGGTGGTCCATGATGTTGATCTTCAAAAGCTACCTGTTCGATTTGCTATGGATAGAGCTGGTTTGGTTGGAGCAGATGGACCAACACATTGTGGAGCATTTGATATCACTTACATGGCTTGCTTACCCAACATGGTGGTCATGGCTCCTTCTGATGAAGCTGAACTGATGCACATGGTTGCAACTGCAGCAACTATAGATGATAGACCAAGCTGCTTTAGATTTCCAAGAGGAAATGGAATTGGAGCCACTCTTCCACTCAATAACAAAGGAACACCACTTGAGATTGGAAAAGGAAGAATTCTGATGGAAGGCACCAGAGTTGCTATTTTGGGATATGGTTCTGTGGTCCAACAATGCAGGCAGGCCTCACAAATGCTTAAAGAACTAGGCATTGATGTGACAGTTGCTGATGCTAGATTTTGCAAACCTTTAGATACTGATCTCATTAGGCTATTAGCTAAAGAGCATGAAATACTCCTCACCGTGGAAGAGGGTTCAATAGGTGGTTTTGGATCACATGTTTCACATTTCTTGAGCTTATCTGGAATCCTAGATGGACCTCTGAAGTGGAGAGCAATGATGCTTCCTGATAGGTACATTGACCATGGATCACCCCAAGATCAGGTTGAAGAAGCAGGGATTTCATCAAAGCACATTGCAGCTACTATCTTGTCCCTTATGGAAAGGCCAAAAGAAGCTCTTCTGTTTAAATAAACACACAAGATGAAATAAGGATCTTGCTTGACCTGGGACCTGAAAAATGCATCCAACTCAAAAGAGACTTCTGTTGGCATTGTGATTTAGAGGAAGCTGTAAATAACTATACTAGAATTTTGTTTACACATCTTGATGTTCACATATTTTGGATTCTCAAGTCAGGCACAAGAATCATGAGTGAATAAAAAGAAGAATTTATTCTGACAACTCAGGGCGCCATCAAGTCGTTGTTTGTAATGTATCTATTATTAATTAATTATTAATTATATTACTGTAATTAGAACAACCACATATGCTATAAAGAAGGTTGAATAGAGTGGGTGAACTCTTGTAACTCTTAAAATTGTTTTTAAGCCCTACTAGAACAAAAAAAATATCATAATTTTTTTACTATATTATTGTTACGGTTTAACATTCATGTTGAGGAAATAATGACTAATTTATAAAAAATA 2659 0.4084 MAFCGTSTFLKPNYSMSPCHKPKVPNRYHDCRNKFSVRVSASGSSDEERTIIKKEKDGWKINFSGEKPATPLLDTVNYPIHMKNLSTQELEQLAAELRADIVHSVSNTGGHLSSSLGVVELAVALHHVFNTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESVHDAFGVGHSSTSISAGLGMAVARDLLGKKNSIISVIGDGALTAGQAYEAMNNAGFLDTNMIVVLNDNKQVSLPTATLDGPATPVGALSSALSKIQASAEFRKLREAAKNITKQIGGQTHEVAAKVDEYARGMISASGSTFFEELGLYYIGPVDGHNIEDLVTIFEKVKATPAPGPVLIHIVTEKGKGYPPAEKASDKMHGVVKFDPKTGHQLKAKSSTLSYTQYFAESLIKEAESDKKIVAIHAAMGGGTGLNYFHKKFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAATIDDRPSCFRFPRGNGIGATLPLNNKGTPLEIGKGRILMEGTRVAILGYGSVVQQCRQASQMLKELGIDVTVADARFCKPLDTDLIRLLAKEHEILLTVEEGSIGGFGSHVSHFLSLSGILDGPLKWRAMMLPDRYIDHGSPQDQVEEAGISSKHIAATILSLMERPKEALLFK 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00266 715 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 72 706 IPR005477 GO:0008661|GO:0016114
Pste7g00266 715 Gene3D - 574 706 IPR009014 GO:0003824
Pste7g00266 715 ProSitePatterns Transketolase signature 1. 98 117 IPR005474 -
Pste7g00266 715 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 367 556 IPR029061 -
Pste7g00266 715 CDD TPP_PYR_DXS_TK_like 401 554 - -
Pste7g00266 715 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 28 712 IPR005477 GO:0008661|GO:0016114
Pste7g00266 715 Pfam Transketolase, C-terminal domain 574 697 IPR033248 -
Pste7g00266 715 Gene3D - 66 367 - -
Pste7g00266 715 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 574 706 - -
Pste7g00266 715 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 73 358 IPR005477 GO:0008661|GO:0016114
Pste7g00266 715 CDD TPP_DXS 109 364 IPR005477 GO:0008661|GO:0016114
Pste7g00266 715 ProSitePatterns Transketolase signature 2. 501 517 IPR020826 -
Pste7g00266 715 SUPERFAMILY TK C-terminal domain-like 569 705 IPR009014 GO:0003824
Pste7g00266 715 SMART Transket_pyr_3 395 560 IPR005475 -
Pste7g00266 715 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 394 562 - -
Pste7g00266 715 Gene3D - 395 562 - -
Pste7g00266 715 Pfam Transketolase, pyrimidine binding domain 395 556 IPR005475 -
Pste7g00266 715 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 70 426 IPR029061 -
Pste7g00266 715 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 75 705 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00266 Pste-Chr7 2431076 2435362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00266 438 653 Acyl Lipid Metabolism Gene Families AT1G55510 22.124 4.29e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g00266 7 2431076 2435362 Pste7g00266 7 2431076 2435362 ECH