LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g03947	atgacgctggtgggactatttctcaccgccaccaagctcgccggagctctcttcactatcaccgtcgccgccaacgccttctccttctcccgctttcgcaacaagaatctccgccgtttccgctcccctatcgacgattcctccgacactctcgcacaatttaacatcaccgaaggggaagatggttttttctttggtttggcgacagcgccagcacatgttgaggacaggcttgatgatgcttggatccagtttgccgaggaaaagagtggtgaagatggtgaatcagagggaaagcacagagtggatgctgtgatgggttctgcttctggcgacggtgggtcccaccaggccacaacatctccgcgaagcaggaagcctctgaaggtggccatggaggcaatgattaggggttttgagaagtacatggaagtggaagggcaagaaggagaagaggaacctcgtcccaacgtagctgcttggcataatgttccgcgcccggaggagaggttaaggttttggtctgaccctgaaacagaaataaaattggccaaggatacaggtgttactgtttttcgcatgggaatagattggtcaagaatcatgccagtggagccagtaaacaaccttaatgaatctgttaactatgctgcgttggaacggtataagtggattatcaatagggttcgatcatacggaatgaaggtgatgctcactctttttcatcactcactgccaccctgggctggtgagtatggaggttggaagctggaaaagacagtggattatttcatggactttaccagggttgttgtaaacggtgtctcagatttggtagactattgggtgacatttaatgagccccacgtcttctgtatgcttacttattgtgctggagcttggcctggtggtcatcctgatatgctagaggctgctacttctgcacttccaactggtgttttccagcaagccatgcattggatgtctgttgcacactcaaaggcatatgactatatccatgaacaaagtaacccattaaattcaatagttggtgtagctcataatgtgtcctttatgcgaccgtatggtttgtttgatattgctgctgtttcactgggtaattcattgactctcttcccatacattgatgcaatatctgagaagctggactatataggcataaactactatgggcaggaagtggtttcgggtccaggcctgaagctggtggaaaatgatgagtacagtgaatctggtcgtggggtataccctgacggcttataccgcatgttgcttcagttccatgaaagatacaaacatctaaatcttccattcatcattacagaaaatggagtttcagatgagacagatttgatccgccgaccatatctcttggagcatttgcttgctatttatgctgctatgatcatgggtgtgcgtgtaattggttacctgttctggactatttctgataactgggagtgggcagatggatatggtcccaagtttggacttgttgcggttgaccgggcaaataatcttgcgcgaatccctcgcccctcttaccatctattttctaaaattgtgaatactggcaagattacacgtgaagatcgtgaaagagcatgggatgaactccaaacagctgcaaaagagaagaaaacaagacccttttatcgggctgtggataaacatcatttaatgtatgcaggtggactggatgaacctgcacaacgaccttatatagaacgagattggcggtttggtcattatcagatggatggactccaggatcccttgagccgcttctcaagattcattattcgaccgttctccctaaaaaggaaaacagaatctcaagagaagaatgcaaaattaattcttcagcctcttgaaacttag	1902	0.0	MTLVGLFLTATKLAGALFTITVAANAFSFSRFRNKNLRRFRSPIDDSSDTLAQFNITEGEDGFFFGLATAPAHVEDRLDDAWIQFAEEKSGEDGESEGKHRVDAVMGSASGDGGSHQATTSPRSRKPLKVAMEAMIRGFEKYMEVEGQEGEEEPRPNVAAWHNVPRPEERLRFWSDPETEIKLAKDTGVTVFRMGIDWSRIMPVEPVNNLNESVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRVVVNGVSDLVDYWVTFNEPHVFCMLTYCAGAWPGGHPDMLEAATSALPTGVFQQAMHWMSVAHSKAYDYIHEQSNPLNSIVGVAHNVSFMRPYGLFDIAAVSLGNSLTLFPYIDAISEKLDYIGINYYGQEVVSGPGLKLVENDEYSESGRGVYPDGLYRMLLQFHERYKHLNLPFIITENGVSDETDLIRRPYLLEHLLAIYAAMIMGVRVIGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFSKIVNTGKITREDRERAWDELQTAAKEKKTRPFYRAVDKHHLMYAGGLDEPAQRPYIERDWRFGHYQMDGLQDPLSRFSRFIIRPFSLKRKTESQEKNAKLILQPLET	633

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g03947	633	MobiDBLite	consensus disorder prediction	105	126	-	-
	Pste6g03947	633	SUPERFAMILY	(Trans)glycosidases	154	537	IPR017853	-
	Pste6g03947	633	Gene3D	Glycosidases	139	543	-	-
	Pste6g03947	633	ProSitePatterns	Glycosyl hydrolases family 1 active site.	445	453	IPR018120	-
	Pste6g03947	633	PRINTS	Glycosyl hydrolase family 1 signature	502	514	IPR001360	GO:0004553\|GO:0005975
	Pste6g03947	633	PRINTS	Glycosyl hydrolase family 1 signature	388	402	IPR001360	GO:0004553\|GO:0005975
	Pste6g03947	633	PRINTS	Glycosyl hydrolase family 1 signature	478	495	IPR001360	GO:0004553\|GO:0005975
	Pste6g03947	633	PRINTS	Glycosyl hydrolase family 1 signature	445	453	IPR001360	GO:0004553\|GO:0005975
	Pste6g03947	633	PRINTS	Glycosyl hydrolase family 1 signature	457	468	IPR001360	GO:0004553\|GO:0005975
	Pste6g03947	633	PANTHER	GLYCOSYL HYDROLASE	125	369	IPR001360	GO:0004553\|GO:0005975
	Pste6g03947	633	Pfam	Glycosyl hydrolase family 1	178	362	IPR001360	GO:0004553\|GO:0005975
	Pste6g03947	633	Pfam	Glycosyl hydrolase family 1	383	531	IPR001360	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g03947	Pste-Chr6	28716254	28722626	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g03947	6	630	Glycoside Hydrolase	AT3G06510	61.584	0.0	840

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste6g03947	6	28716254	28722626	Pste6g03947	6	28716254	28722626	ECH