Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03615 atgtcgagagttgaaggtggtaaagagaatggtgaagaggtgagcaatttgttattaaaagatgtagaaagcataaataaagctctatacagggaaaaaagctcttccacgaattcaacatcttccaaatcccaattacatgatcccaaatcaaagcctaaagctagcaaagaagatgctttgcgtaaggagaagaagtccatatggaattggaagccattgaaggccctttccctcactcgtaataagaagttcaattgtaatttttctgttcaagtccatttgattgaagggttgcccttgagtttcaatgattctagcctgtgtgtgcactggaagaggaaggatgcgcttttggtgacccctccagccaaagtgattgaaggtgtggctgagtttcaaggcattttgactcacacttgctcaatctctggaagtagaagtggacccagtaattctgctaaatatgaagctaaacaatttctgctttatgctgttatgcttggtgccccagaacaagatttggggaagcaccgggtggatctcaccagtttacttcctctcacactggaagagcttgaagaggagaaaaggtcagggcaatggactacaagttttatattatcaggaactgcacgaggtgcaataatgaatgtcagctttgggtatgtaattgttggtgataataatactagtgctaccagagaaaaccatggcgcttctcctaatgtattcagttccaggattccttttccaaacccagatataaaacgtagtcagcttcgcaagagcgttatacgtactggaagtttaccaagctttgccgaaaattattattcctctcaaagtgtagaagaggtgaaggatcttcatgaggtgttggtatcatcagaatctgcacgaaccagcacagtggatcatttatataaggaatttgatgaagaaaatacctgttgtctgctgcacgataaacccgaacttggtggattcaaagtaaatcttaattcaatcaaatcggttgtctgttcttcatctgatcgtgacaaagaaaagccggatgagaaaccaggtaatgacggaaaaacatgcactctgttgcatgatagacctgaatttgatacgtttcaagaaaaactggagacagttaagctggatgattatcctgtatctgattctggaatagaaattttcgaagactgtacaggtaatggattttctattgttgatcagggcaacgaattttcaccaaatgaacgtgttaaactagaggaatctattataaaagctgttgttgatgcctacacagttaacagtgcttgggcccttgatcctgctggtattcaaaaatcatctcaagacagcgctgaacaggattcccagaatgaactaaagtatagttcaggggaaagttcagtgttacatgaattttctaacaaaaaggacgagttatgcactaaagaacttctactacaagaactagaatcagctttaaataatgtcttacagttagagacagtggcaatggaatctccggacaccatgggagcaaaatctgaatataagttgagaaagtcacatagtttggaaaacgttacgggatcagctgccagtgattttttaagtatgctaggctttgatcatagtccaatcggtttgagttttgaaagcgaacctgagtctccaagagagcgccttttaagacaatttgagaaggaagctctgtctgggggcttctctttgtttgattttgacacgggcaatgatagtgaaacagatggtgactatgatgcttcttttggatccgaacagtgggagttctcgacagatattaagccagaatcctcgttgccagatctgcagaaagggcatctaattgagtctgaggatgagaggtgcaaacacaaggtcaagatgctagaagacttggaaacagaagccttaatgcgtcaatggggtttgaatgagacggcttttcagcattctcctgagagagattataaaggttttggaagtccaatatattttctacctgaagaccctctaccattacctcctctggcagtgggattaggtccttttcttcagaccaaagacggggggtttctgcggtcaatgaatccctcacttttcaggaatagtagaagtggtggtacattaatcatgcaggtttccaacccagttgtggtacctgctgaaatgggttctgggataatggagatgttgcagtgtttggcttcaatgggaattgaaaagctttccatgctggccaagaagttaatgcctctggaagatatcgcagggaagacaacgcaacaaatatcatgggaagcaaagcaaatcttggagggaacacacaagcaataccatttgcagcatgatttggtaactggacaggattctacttgtacacaaaggggcttgaaaggaatgttatctgggggactaaagtctgatgagtttagttcatgttcagttggcaaccagagaggctcagagtttgtttcatttgaggatcttgctccattggctatgggtaaaactgaagcactttcactagagggattgagaatacaatctggaatgtcaaatgaggatgcaccatcaaacattactgcacaatcatttagggacatttcagctttccaaggcaagggagttagtatcagtggatcccttggcctggatggagctgctgccttgcagttgttggatatagaagacagcaataaggatgatgttgttgatgcgataatgggcctatcattaactcttgatgaatggatgagactagattctggtgagattgttgatgatatagataatatcagtgagcatacttccaaacttcttgctgcgcataatgctaactcctttgacataattagtgggagttcaaagggagagaggaaacaaggcacaagctctggaaggaaatgtggcttgttgggaaacaatttcacattagctctaacggtgcaacttcgtaatcctctgagaaactatgagcctgttggaacaccaatgtttgctcttatacaggtggagagagtctttgtcccaccaaagcaaaacatttataagcgtgtgtcagaggcaaggaacaaatgtgatgaggatgatgagagtgaaatagttgccaaggtagagatgaaggccatcaaagaagagaaaagttttgaagaggaagccattcctcagttcagaattacagaagtacattttgcaggtttaaagactgagcctaaaaaagataatatttgggacacttcaagacgacaacaagagtcagcttcccgctggttgatggctaatggaatgggaaagaagaataagaatccattaatgaagtccaaggttgtatctaaatctaatgctccaaccactaccacaaacgtgcaacccggtgacacgttatggagcatatcatctcgcatttatggtactggaacaaggtggaaggaattggtagaactaaatccacatataagaaatcccaatatcattatacctaataaaactatgcgttaa 3528 0.0 MSRVEGGKENGEEVSNLLLKDVESINKALYREKSSSTNSTSSKSQLHDPKSKPKASKEDALRKEKKSIWNWKPLKALSLTRNKKFNCNFSVQVHLIEGLPLSFNDSSLCVHWKRKDALLVTPPAKVIEGVAEFQGILTHTCSISGSRSGPSNSAKYEAKQFLLYAVMLGAPEQDLGKHRVDLTSLLPLTLEELEEEKRSGQWTTSFILSGTARGAIMNVSFGYVIVGDNNTSATRENHGASPNVFSSRIPFPNPDIKRSQLRKSVIRTGSLPSFAENYYSSQSVEEVKDLHEVLVSSESARTSTVDHLYKEFDEENTCCLLHDKPELGGFKVNLNSIKSVVCSSSDRDKEKPDEKPGNDGKTCTLLHDRPEFDTFQEKLETVKLDDYPVSDSGIEIFEDCTGNGFSIVDQGNEFSPNERVKLEESIIKAVVDAYTVNSAWALDPAGIQKSSQDSAEQDSQNELKYSSGESSVLHEFSNKKDELCTKELLLQELESALNNVLQLETVAMESPDTMGAKSEYKLRKSHSLENVTGSAASDFLSMLGFDHSPIGLSFESEPESPRERLLRQFEKEALSGGFSLFDFDTGNDSETDGDYDASFGSEQWEFSTDIKPESSLPDLQKGHLIESEDERCKHKVKMLEDLETEALMRQWGLNETAFQHSPERDYKGFGSPIYFLPEDPLPLPPLAVGLGPFLQTKDGGFLRSMNPSLFRNSRSGGTLIMQVSNPVVVPAEMGSGIMEMLQCLASMGIEKLSMLAKKLMPLEDIAGKTTQQISWEAKQILEGTHKQYHLQHDLVTGQDSTCTQRGLKGMLSGGLKSDEFSSCSVGNQRGSEFVSFEDLAPLAMGKTEALSLEGLRIQSGMSNEDAPSNITAQSFRDISAFQGKGVSISGSLGLDGAAALQLLDIEDSNKDDVVDAIMGLSLTLDEWMRLDSGEIVDDIDNISEHTSKLLAAHNANSFDIISGSSKGERKQGTSSGRKCGLLGNNFTLALTVQLRNPLRNYEPVGTPMFALIQVERVFVPPKQNIYKRVSEARNKCDEDDESEIVAKVEMKAIKEEKSFEEEAIPQFRITEVHFAGLKTEPKKDNIWDTSRRQQESASRWLMANGMGKKNKNPLMKSKVVSKSNAPTTTTNVQPGDTLWSISSRIYGTGTRWKELVELNPHIRNPNIIIPNKTMR 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03615 1175 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 82 228 IPR019448 -
Pste6g03615 1175 SUPERFAMILY LysM domain 1128 1173 IPR036779 -
Pste6g03615 1175 Coils Coil 625 645 - -
Pste6g03615 1175 MobiDBLite consensus disorder prediction 30 61 - -
Pste6g03615 1175 Coils Coil 486 506 - -
Pste6g03615 1175 MobiDBLite consensus disorder prediction 30 46 - -
Pste6g03615 1175 ProSiteProfiles LysM domain profile. 1128 1175 IPR018392 -
Pste6g03615 1175 Gene3D LysM domain 1120 1175 IPR036779 -
Pste6g03615 1175 Pfam LysM domain 1132 1172 IPR018392 -
Pste6g03615 1175 MobiDBLite consensus disorder prediction 47 61 - -
Pste6g03615 1175 CDD LysM 1132 1170 IPR018392 -
Pste6g03615 1175 ProSiteProfiles C2 NT-type domain profile. 77 225 IPR019448 -
Pste6g03615 1175 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1171 IPR039614 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03615 Pste-Chr6 25270371 25274314 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03615 6 25270371 25274314 Pste6g03615 6 25270371 25274314 ECH
Pste6g03615 6 25270371 25274314 Pste2g01308 2 14373453 14378096 PCT