Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03043 atgtcgggtggcacgcagaagagtctgagaaaagcacttggggcccttaaggacaccacaacagtctcgttggctaaggtcaacagtgattacaaggaattggacattgctattgttagagccacaaatcatgtcgaacgtcctgccaaggaaaaacatataagagctatattttcagctatctcagctacaagacccagggccgatgttgcctattgcatccatgctcttgccaggcgtttatcgaaaacacataattgggcggttgcattgaaaactttaattgttattcaccgtgctctaagggaagtggatcctacatttcatgaagaactcattaattatgggagaagtagaagtcatatgctcaacatggctcattttaaagatgattccagtccaaatgcatgggattattctgcatgggtccgaacttatgccttatttttggaggaaaggctggaatgtttccgtgtgttgaagtatgacattgaggcagatcgtcctaggaccaaagatttggatactgcagaactgttagagcagttgccagctttacagcaacttctcaatagagttattggttgtcagccacatggggcagctgtaaataactttgtcattcagttagctctatcaatggttgcttcagaaagcattaaaatttatcaagctattagtgatggcacagtcaatatggttgataagttttttgagatgcaacgccaagatgctctgaaagctcttgatatatacaggagggttgggcagcaggctgagagactgtcagagttttatgaaatatgccgtaatcttgatattggacgtggagagaagtttattaaagttgagcagccgccttcatcatttctgcaagccatggaagagtatgtcaaagacgccccccagggacctatagttcgtaaggatcaggctattgaaaacaaagaagttttggctattgaatataaaaagacaactgaggtgcaagaagaacgcccaccctcaccctcaccttcaccccctccacctccaccttctgaacctgtgaaagtggaaccaccaccagtacaaccaccacctgatctgttgaatttggaggatcctgttccagctgctgcagagttggaagagaagaatgcattggctttagccattgttcctgttgctgttgaacaaccacctgctgtttcaaatcaagcaaatggaactacaggatgggaattggcacttgtcactgctcctagttcaaatgagagtgctacatctgctagcaaattggctggaggttttgacaagcttacactggacagcctatacgatgatgcactcaggagaaacaaccaaaatgtcagctataatccatgggagcctgcatcagtgggaaacatgatgcaaccaacaatgcatgatccgttttttgcctctaatacagttgctgctccaccttctgtacagatggcttctatgtccaaccagcagcaagctttcatgtatcaacagcagcagcatatgatgacgacgccccctcaacaacaatcagcaaatccttttggaaatccttatggagctactgtccacccctatgcctcaggtatgcctgttcagtcatacaatccatatacaggtctcatctag 1638 0.0 MSGGTQKSLRKALGALKDTTTVSLAKVNSDYKELDIAIVRATNHVERPAKEKHIRAIFSAISATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFHEELINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRTYALFLEERLECFRVLKYDIEADRPRTKDLDTAELLEQLPALQQLLNRVIGCQPHGAAVNNFVIQLALSMVASESIKIYQAISDGTVNMVDKFFEMQRQDALKALDIYRRVGQQAERLSEFYEICRNLDIGRGEKFIKVEQPPSSFLQAMEEYVKDAPQGPIVRKDQAIENKEVLAIEYKKTTEVQEERPPSPSPSPPPPPPSEPVKVEPPPVQPPPDLLNLEDPVPAAAELEEKNALALAIVPVAVEQPPAVSNQANGTTGWELALVTAPSSNESATSASKLAGGFDKLTLDSLYDDALRRNNQNVSYNPWEPASVGNMMQPTMHDPFFASNTVAAPPSVQMASMSNQQQAFMYQQQQHMMTTPPQQQSANPFGNPYGATVHPYASGMPVQSYNPYTGLI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03043 545 ProSiteProfiles ENTH domain profile. 26 164 IPR013809 -
Pste6g03043 545 FunFam putative clathrin assembly protein At5g35200 166 318 - -
Pste6g03043 545 Pfam ANTH domain 33 300 IPR011417 GO:0005543
Pste6g03043 545 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 498 IPR045192 GO:0048268|GO:0072583
Pste6g03043 545 Gene3D ANTH domain 165 319 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Pste6g03043 545 FunFam Clathrin assembly protein AP180 8 164 - -
Pste6g03043 545 MobiDBLite consensus disorder prediction 334 366 - -
Pste6g03043 545 SMART enth_2 32 164 IPR013809 -
Pste6g03043 545 SUPERFAMILY GAT-like domain 169 300 - -
Pste6g03043 545 SUPERFAMILY ENTH/VHS domain 33 165 IPR008942 -
Pste6g03043 545 CDD ANTH_N 34 157 - -
Pste6g03043 545 MobiDBLite consensus disorder prediction 326 367 - -
Pste6g03043 545 Gene3D - 7 164 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03043 Pste-Chr6 18586653 18592205 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03043 6 18586653 18592205 Pste6g03043 6 18586653 18592205 ECH
Pste6g03043 6 18586653 18592205 Pste2g00690 2 7172328 7175745 PCT