Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02672 atggcacaaacacaaacccaaacccagagaccctgttctagtatcctggattctctgggagaagaaatcgtaagaatcatcgcacccgtgtcaatatgcatgttcttggtcgtaatcctggtgtcaattctgaacaccgattcttctttcttcgacgaatcgatgacgagcataatcaccatggcgtacaacgaaacaacctcggactccacctgggacaaattcgtaggtgcacttttgaactccttggctttcgtcgtcctcgtcaccttcgcaaccttcgtcttggtcctcctcttctacttccgatgcaccaggttcttgaaactctacatggccttctccactttcatcgtgttgatattcctcggcggtgaagtctcgctctttttgatccaacagtttagcactccccttgattgcattacgtttttcctggttttgtgtaatttcgctgttgtgggtgtattaagcgtgtttatgttaaaaatgccgattgtcgtgacgcaggggtatttggttgttgttggaatgttggttgcttattcgttcactatgttgcctgagtggaccacatgggccttgcttgttgctatggcgttgtatgaccttgctgcagtcttgttaccagttgggccgttaaggcttttggtagagcttgctatttcaagggatgaggaaattcctgcattggtttatgaggccaggccagtaaaccatggtaatttggatgctagggatgtgttgcagaggcgattatggagagataggaggcttcagaatttaaatctaacactaactcaaactgattccaatttgaatgccaactcagtgttgattcatggcccaaattctgaatctcactctgactcggatgcaaatgtgggcaataaccagggtcacgccaacctggttacggaaaatgcatcttcaaatacaaatttgaatgataacagttttagtggttcctttagttacagaaatttggtcaatgtggaagagggacgggtgcgagttcaagatactggattggacctttctgcgcccttgattgatcgtggaatgaatgtacaacagcttgttaggggggaagatgctgcgtcaattgaaaatttgatgctagagggaattggattgggttcttctggttcaatcaagttagggctgggagattttatcttctacagtgttttggttggtagggcagcaatgtatgattttatgacagtgtatgcgtgttatcttgctattattgccggtcttggcataactttgatgcttttggctttatatcagaaagctttgcctgctcttcctgtgtcagtggcacttggtgtgttgttttatttcttaacccggctcttacttgaagtatttgtagtacaatgttccttgaatctcctgttgttctaa 1413 0.0 MAQTQTQTQRPCSSILDSLGEEIVRIIAPVSICMFLVVILVSILNTDSSFFDESMTSIITMAYNETTSDSTWDKFVGALLNSLAFVVLVTFATFVLVLLFYFRCTRFLKLYMAFSTFIVLIFLGGEVSLFLIQQFSTPLDCITFFLVLCNFAVVGVLSVFMLKMPIVVTQGYLVVVGMLVAYSFTMLPEWTTWALLVAMALYDLAAVLLPVGPLRLLVELAISRDEEIPALVYEARPVNHGNLDARDVLQRRLWRDRRLQNLNLTLTQTDSNLNANSVLIHGPNSESHSDSDANVGNNQGHANLVTENASSNTNLNDNSFSGSFSYRNLVNVEEGRVRVQDTGLDLSAPLIDRGMNVQQLVRGEDAASIENLMLEGIGLGSSGSIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLMLLALYQKALPALPVSVALGVLFYFLTRLLLEVFVVQCSLNLLLF 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02672 470 PRINTS Presenilin family signature 27 37 IPR001108 GO:0004190|GO:0016020|GO:0016485
Pste6g02672 470 PRINTS Presenilin family signature 186 193 IPR001108 GO:0004190|GO:0016020|GO:0016485
Pste6g02672 470 PRINTS Presenilin family signature 203 220 IPR001108 GO:0004190|GO:0016020|GO:0016485
Pste6g02672 470 FunFam Presenilin 361 461 - -
Pste6g02672 470 Pfam Presenilin 20 460 IPR001108 GO:0004190|GO:0016020|GO:0016485
Pste6g02672 470 SMART psh_8 76 456 IPR006639 GO:0004190|GO:0016020
Pste6g02672 470 Gene3D Presenilin 378 462 IPR042524 -
Pste6g02672 470 PANTHER PRESENILIN 6 470 IPR001108 GO:0004190|GO:0016020|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02672 Pste-Chr6 14140206 14142220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02672 7 470 Miscellaneous Gene Families AT2G29900 58.621 2.40e-155 445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02672 6 14140206 14142220 Pste6g02672 6 14140206 14142220 ECH