Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02325 atggaacacagcagatccttcaacgagtccaattataacatcagcctctcttcgcaacgcagcctcgcctcagtcccttccctcaactcacactctcaactcctcaagtcttccaccgtctcttacacttgcctcgccactctcaaaccccaaacctcatcttcatacacctcctccctcaccatcgcgggcaagttcctctacgcaggttcatccgacagggaaatcagatcctggacccacaaccatttccactcccatcaacaacaacaagaagaagaacacgttgttattgcaggaaaaggtgctgttaagtccctggtggttcactccgacaaactcttcagtgcccaccaagaccacaaaatccgagtctggaaaatctcgaacgtggaacaggaccagcacaagtacacacgtgtggcgacgcttcccacgtttggggaccgtgtgaccaaaatcttgatcccgaagaaccacgtgcagattcggcggcacagaaaatgcacctgggttcaccacgtggataccgtctcctccctggccttgtccaaagacggaaccttgctgtactccgtctcgtgggacagaacaattaaggtttggcgcacgaaagacttctcgtgcttggagtccgttcgcaacgcccacgacgacgccataaacgcggtcgtagtctcttacgatgggcacgtgtacacgggatccgcggataagaggataagggtttggaaaagagggaaaggggagaagaaacacgcgttgatggacacgttggagaagcacaactctgggatcaacgccttggcgcttagtggtgatggttctgtgctatattccggtgcatgtgataggtcgatattggtttcggagaagggagagaatggtaaattggtggcggttggtgccttgaggggacacagtaggtcgattttgtgtttggctgtggtttcggatttagtgtgtagtggttctgaggataaaaccattcgtatctggagagggattcagaaggagtattcgtgtttagctgttttggaagggcataagagtccaattaagtgcttaactgcagcagttgctcatggtgatgatgatccctccgaagcctcgttccttgtctatagtggcagtttggactgtgactttaaggtttggaagctttttgttcctgttttttcaacttaa 1188 0.0 MEHSRSFNESNYNISLSSQRSLASVPSLNSHSQLLKSSTVSYTCLATLKPQTSSSYTSSLTIAGKFLYAGSSDREIRSWTHNHFHSHQQQQEEEHVVIAGKGAVKSLVVHSDKLFSAHQDHKIRVWKISNVEQDQHKYTRVATLPTFGDRVTKILIPKNHVQIRRHRKCTWVHHVDTVSSLALSKDGTLLYSVSWDRTIKVWRTKDFSCLESVRNAHDDAINAVVVSYDGHVYTGSADKRIRVWKRGKGEKKHALMDTLEKHNSGINALALSGDGSVLYSGACDRSILVSEKGENGKLVAVGALRGHSRSILCLAVVSDLVCSGSEDKTIRIWRGIQKEYSCLAVLEGHKSPIKCLTAAVAHGDDDPSEASFLVYSGSLDCDFKVWKLFVPVFST 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02325 395 SMART WD40_4 164 203 IPR001680 GO:0005515
Pste6g02325 395 SMART WD40_4 252 291 IPR001680 GO:0005515
Pste6g02325 395 SMART WD40_4 41 80 IPR001680 GO:0005515
Pste6g02325 395 SMART WD40_4 339 387 IPR001680 GO:0005515
Pste6g02325 395 SMART WD40_4 206 245 IPR001680 GO:0005515
Pste6g02325 395 SMART WD40_4 90 127 IPR001680 GO:0005515
Pste6g02325 395 SMART WD40_4 297 334 IPR001680 GO:0005515
Pste6g02325 395 Pfam WD domain, G-beta repeat 341 387 IPR001680 GO:0005515
Pste6g02325 395 Pfam WD domain, G-beta repeat 209 245 IPR001680 GO:0005515
Pste6g02325 395 Pfam WD domain, G-beta repeat 170 202 IPR001680 GO:0005515
Pste6g02325 395 Pfam WD domain, G-beta repeat 257 288 IPR001680 GO:0005515
Pste6g02325 395 Pfam WD domain, G-beta repeat 302 333 IPR001680 GO:0005515
Pste6g02325 395 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 202 - -
Pste6g02325 395 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 388 IPR045182 -
Pste6g02325 395 FunFam BnaA09g28200D protein 161 249 - -
Pste6g02325 395 Gene3D - 10 159 IPR015943 GO:0005515
Pste6g02325 395 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 333 - -
Pste6g02325 395 Gene3D - 160 390 IPR015943 GO:0005515
Pste6g02325 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 333 IPR001680 GO:0005515
Pste6g02325 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 254 IPR001680 GO:0005515
Pste6g02325 395 SUPERFAMILY WD40 repeat-like 41 388 IPR036322 GO:0005515
Pste6g02325 395 CDD WD40 64 387 - -
Pste6g02325 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 212 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02325 Pste-Chr6 11273795 11275204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02325 216 387 Acyl Lipid Metabolism Gene Families AT3G18860 28.333 5.41e-09 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02325 6 11273795 11275204 Pste6g02325 6 11273795 11275204 ECH