Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02294 atgatgagtgattatacagtggagactataaatgatggactcagtgaattcaacgtggagtttcatggtccaaaagaaagcctttatgaaggtggagtctggaaaatacgtgttgaacttcctgatgcttatccatacaaatccccttctataggctttgtgaacaaaatattccacccaaatgtagatgagctatctggctctgtatgcttggatgtcattaaccaatcttggagtccaatgttcgatcttctaaatgtctttgaagtttttcttccccaactcttgctttatccaaatgcttcagatcctctcaatggtgatgcagcatcgttaatgatgaaggataaaaagctgtatgatcagaaagttaaagagtattgtgagcggtatgctaagaaggaaaacattaccaacacagctggtgaggagagtgaagatgaggaagacatcagtgaagaagaaagtggtggatctagtgacgatgacattcctgctgtcacaactatctacttgataaacaaatgtcccttaattgcttttggaatgaatacccttgaggaagtttggaacggtcaccttcctaatcttgaaattttgagaatctttgactgtggagcttatgcccatattaggcaagatatactaaaaagttcccttctcaaactgaaggaactgaatctgatgaagaagaagaaagactcagtggagaccacccatcagatgactcatacaagattgctagatacaaagagatccattagacctctagaaaggtatggatatgtagacttgattgcattatcccttatagtagctagctatgttttagaagaagaacctaagaatgcaaagtttactctagaaagtaaggagaataaggaatggctgaaagctatgaatgaagagatgaagtatcttaatgccaaccatacctggagcttgatgaggaagcctgctgattcgagggtggcaaggttggtggctagaggtttcacgcagagggaaggaattgactataatgatctcttttctccgatggtgaagcacaggtccatcagaattctactagccatggttgctgggcttgacctcgaattggaacaaatggatgtcaaaactacactactgtatgaagaccttgaaggaaccatttacatgaaggaactaaaagtatttgaggtaagacgtaaaaatgaccatgcatgtaaactaaacatgtccctgtatggtctgaaacaatccccaaggcaatggaacagaagatttgatgagttcattgcgaaaatcgggttcttgcaaagtaaatatgacaactgtgcctacattcaattttatgcagacctgcttatggtattgcttttgtatgtggacaacatcctgattgtaagtaacagtaagtctgctgtacaaagggtgaaggctgatttgagcaaaaaatttgagatgaaagatttgggaaatgctgagaagattttggggattgagatcataagaaggaaggataacaacctgttgtacttgtctcaagaaaagtaccttaagaagattcttgataagttcggattttcaaacttgacaccaatcactactcccttagctcgacacttaaagctgtgtgagactcaatcacctcaagtggtcaacagatttattgccaatcctggacgagcacactggaattcactcataggatatgtcttcacgacatttgccattgtagttagttggaaggctagtatgcagaaggttatggccctgtcaaccaatgaagttgaatacatagtaataaggaagctctatagctcaaagggattgctgaagacctaa 1830 0.0 MMSDYTVETINDGLSEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDQKVKEYCERYAKKENITNTAGEESEDEEDISEEESGGSSDDDIPAVTTIYLINKCPLIAFGMNTLEEVWNGHLPNLEILRIFDCGAYAHIRQDILKSSLLKLKELNLMKKKKDSVETTHQMTHTRLLDTKRSIRPLERYGYVDLIALSLIVASYVLEEEPKNAKFTLESKENKEWLKAMNEEMKYLNANHTWSLMRKPADSRVARLVARGFTQREGIDYNDLFSPMVKHRSIRILLAMVAGLDLELEQMDVKTTLLYEDLEGTIYMKELKVFEVRRKNDHACKLNMSLYGLKQSPRQWNRRFDEFIAKIGFLQSKYDNCAYIQFYADLLMVLLLYVDNILIVSNSKSAVQRVKADLSKKFEMKDLGNAEKILGIEIIRRKDNNLLYLSQEKYLKKILDKFGFSNLTPITTPLARHLKLCETQSPQVVNRFIANPGRAHWNSLIGYVFTTFAIVVSWKASMQKVMALSTNEVEYIVIRKLYSSKGLLKT 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02294 609 FunFam Ubiquitin-conjugating enzyme 5, E2 1 145 - -
Pste6g02294 609 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 133 IPR000608 -
Pste6g02294 609 Pfam Ubiquitin-conjugating enzyme 5 127 IPR000608 -
Pste6g02294 609 SUPERFAMILY UBC-like 4 135 IPR016135 -
Pste6g02294 609 CDD UBCc 1 128 IPR000608 -
Pste6g02294 609 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 324 533 IPR013103 -
Pste6g02294 609 PANTHER GAG-POL-RELATED RETROTRANSPOSON 167 549 - -
Pste6g02294 609 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 58 74 IPR023313 -
Pste6g02294 609 SMART ubc_7 1 133 - -
Pste6g02294 609 MobiDBLite consensus disorder prediction 138 163 - -
Pste6g02294 609 SUPERFAMILY DNA/RNA polymerases 392 523 IPR043502 -
Pste6g02294 609 MobiDBLite consensus disorder prediction 142 160 - -
Pste6g02294 609 Gene3D Ubiquitin Conjugating Enzyme 1 146 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02294 Pste-Chr6 11001807 11012904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02294 289 533 Receptor kinase-like Gene Family AT4G23160 33.333 2.67e-43 165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02294 6 11001807 11012904 Pste6g02294 6 11001807 11012904 ECH