Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02089 atgaaggcaacactacggtacttagcaggcattgctgggcctagtggtttcggctcaaattcaacagctgagcaagtcactgaagatttctcttcctttctcccttcaaaactaaccgctctcatcactggtgggacttcaggtattggagctgaaacagccagagtgttagcaaagagaggagtgagggttgtgattggtgccagggacttgagaaaggccagggaagtgagagagaaaatccaaaaggagagtcctcatgctgaggttattctgttggagattgatctcagctcctttgcttctgtacagagattttgttccgagtttttagctttagaactaccccttaatattctcataaacaatgcaggaatgtactctcaaaacttggagttctccgaagagaaaattgagatgacatttgctacaaattacttaggacactttctgttaacaaaaatgctattagagaagatgatagatacagcaaagaagacaggcattcaaggaagaattataaacgtttcttctgtgattcatagttgggttaaaagatctggtttttgtttcaacgacatgctctgcgggaaaacttataatggcacacgcgcatatgctcagtcaaaattggccacaattctgcatgtgaaggaagtggccagacagctgaaggaaaggaatgcaaatgtaactattaacgcagtgcatccaggcattgttaagacgggaattattagagcacataagggcttaataacggattccctttttttcattgcgtccaagttactgaaatcgatatcacagggggcatcaacgacgtgttatgttgctctaagcggacaaacagatggagtgagtgggaaatattttacagattgtaacgagagtaactgttcaaatctagcgaatgatgaatcagaagctagaaagttatggaacgacacctatgccttccttcacaaacgcctccgtcaagcaacaaattga 993 0.0 MKATLRYLAGIAGPSGFGSNSTAEQVTEDFSSFLPSKLTALITGGTSGIGAETARVLAKRGVRVVIGARDLRKAREVREKIQKESPHAEVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKTGIQGRIINVSSVIHSWVKRSGFCFNDMLCGKTYNGTRAYAQSKLATILHVKEVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGQTDGVSGKYFTDCNESNCSNLANDESEARKLWNDTYAFLHKRLRQATN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02089 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Pste6g02089 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Pste6g02089 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Pste6g02089 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Pste6g02089 330 Gene3D - 35 325 - -
Pste6g02089 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Pste6g02089 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Pste6g02089 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Pste6g02089 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Pste6g02089 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Pste6g02089 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Pste6g02089 330 PANTHER RETINOL DEHYDROGENASE 14 315 - -
Pste6g02089 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 298 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02089 Pste-Chr6 9850708 9858238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02089 19 245 Acyl Lipid Metabolism Gene Families AT1G63380 28.085 3.14e-14 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02089 6 9850708 9858238 Pste6g02089 6 9850708 9858238 ECH
Pste6g02089 6 9850708 9858238 Pste2g00195 2 1019912 1021971 PCT