Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02060 TTTGCCAATTGTTGTCTGAACTCTGAACCAAATTTACTTCTTCCAGTTGCACAAGCAAAGTTCTCCCACAAACTTCTTCTTTCTCTTCTCCCCAAACACCTCTCTGTCTCTCTCTCAATCCCTGAAAAGCAAATAACTGAGGAAAAGAAAACAAAACACAGAGACAAAAGGAACAAACAAAAACCATGTCTTCTCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTCCATTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTGTGGAAAGTAAGAGTTGAATTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTGTCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTAATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCGAATCCGTCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGATCGACCCAATTATGACCAGAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAGCCTAAAGACATAGGAGTTGCCACAGAAGAGAAATCCAGTGACGAGGAGCTAAGTGAAGATGAATATGATTCTAGTGATGAACAAGTTGCTGGCAAGGCAGACCCCTAAGCTGGCATGCATGCCCTGCTCTTCTCTTTCTATATTTTACTTGTACATGATGTTCTAGTCATGTTAATTCACGTCATTAAATCTAATGTACTTGGTTCTGGATGGGCCAAAATTCTCCTTCCTCTTATTTAGTTACTCTGTCACTGTAAATAATGTACCATTGATTTCCTCATGCAATCTTATTTATTCTTACTCTCTA 936 0.4006 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPNYDQRVKEYCEKYAKPKDIGVATEEKSSDEELSEDEYDSSDEQVAGKADP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02060 183 Gene3D Ubiquitin Conjugating Enzyme 1 160 IPR016135 -
Pste6g02060 183 SMART ubc_7 4 148 - -
Pste6g02060 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Pste6g02060 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Pste6g02060 183 CDD UBCc 7 143 IPR000608 -
Pste6g02060 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Pste6g02060 183 MobiDBLite consensus disorder prediction 153 183 - -
Pste6g02060 183 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Pste6g02060 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Pste6g02060 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02060 Pste-Chr6 9672350 9675306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02060 26 163 Miscellaneous Gene Families AT1G17280 24.516 3.13e-06 44.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02060 6 9672350 9675306 Pste6g02060 6 9672350 9675306 ECH
Pste5g01371 5 8838341 8841326 Pste6g02060 6 9672350 9675306 PCT