Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01953 atgaaccattccgcaagcctcaaagaccactgcatcacatccctcaaaaccctaacaccccacatcacctgcctcgccatccaccgtaacctcctctacgccgcatccgtcaacctcatcaacgtcttcgacctctctcattactccctcctcgacgctttcaaccaaagccccgcctcaggcttcgtcaagtccatcaccttcaccaattcaagagtcatcaccgcccaccaagaccgcaagattcgcgtctggttcattactcccgctaaacgacaccgtcttctctcctccctccccaccttagctgaccgtttacgatgctgcatccttccccgaaactacgttagcgttcgacgccataagtccagcctctggatcaagcattgcgacaccgtctccggtttggccgttaaccagaggtttatgtattcggtttcgtgggataagagctttaaggtttgggaccttattagttaccggtgtttggagtccgttaaggcgcatgacgacgccatcaacgctgtggctgttaatagtgacggcgccgtttacacagcctccgccgacgggagcatcaaggtttggaggagggatgacggtgcgaaacggcacgcgttggtcagcaccatagggaagcagaagtcaacagtcaatgcgcttgcgttggagggcggtggtgcgggatttttttccggcggttgcgacggcgcgatctgcaggtgggagtgggggtacagggaaaacgacgtcgtgaagatggagacgttgtcggggcatggtggggccatactgtgtctgatccacgtggcgggtttgttggcgagtgcgtcatcagatctaacggttagaatctggcaacggggaacgggtagtagtgggtattgttgcagggcagtgttggaagggcacgagaaaccggttaagtcgttggtggcattttctgagactgaaggtgattccaacggcgtcgttacgctctttagtggaagccttgatggggtgatcaaggtgtggcaggtgtttggtttagcttga 1038 0.0 MNHSASLKDHCITSLKTLTPHITCLAIHRNLLYAASVNLINVFDLSHYSLLDAFNQSPASGFVKSITFTNSRVITAHQDRKIRVWFITPAKRHRLLSSLPTLADRLRCCILPRNYVSVRRHKSSLWIKHCDTVSGLAVNQRFMYSVSWDKSFKVWDLISYRCLESVKAHDDAINAVAVNSDGAVYTASADGSIKVWRRDDGAKRHALVSTIGKQKSTVNALALEGGGAGFFSGGCDGAICRWEWGYRENDVVKMETLSGHGGAILCLIHVAGLLASASSDLTVRIWQRGTGSSGYCCRAVLEGHEKPVKSLVAFSETEGDSNGVVTLFSGSLDGVIKVWQVFGLA 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01953 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 196 - -
Pste6g01953 345 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 341 IPR045182 -
Pste6g01953 345 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Pste6g01953 345 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Pste6g01953 345 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Pste6g01953 345 SMART WD40_4 159 197 IPR001680 GO:0005515
Pste6g01953 345 SMART WD40_4 8 44 IPR001680 GO:0005515
Pste6g01953 345 SMART WD40_4 47 86 IPR001680 GO:0005515
Pste6g01953 345 SMART WD40_4 250 287 IPR001680 GO:0005515
Pste6g01953 345 SMART WD40_4 294 340 IPR001680 GO:0005515
Pste6g01953 345 SMART WD40_4 120 156 IPR001680 GO:0005515
Pste6g01953 345 SMART WD40_4 204 243 IPR001680 GO:0005515
Pste6g01953 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 287 IPR001680 GO:0005515
Pste6g01953 345 Pfam WD domain, G-beta repeat 255 286 IPR001680 GO:0005515
Pste6g01953 345 Pfam WD domain, G-beta repeat 297 339 IPR001680 GO:0005515
Pste6g01953 345 Pfam WD domain, G-beta repeat 161 196 IPR001680 GO:0005515
Pste6g01953 345 SUPERFAMILY WD40 repeat-like 10 342 IPR036322 GO:0005515
Pste6g01953 345 Gene3D - 113 344 IPR015943 GO:0005515
Pste6g01953 345 Gene3D - 5 101 IPR015943 GO:0005515
Pste6g01953 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 206 IPR001680 GO:0005515
Pste6g01953 345 FunFam BnaA09g28200D protein 116 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01953 Pste-Chr6 9052504 9059826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01953 69 341 Acyl Lipid Metabolism Gene Families AT3G18860 28.041 1.63e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01953 6 9052504 9059826 Pste6g01953 6 9052504 9059826 ECH