Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01838 atggcaacggcgggagacagtgtggttcagcctcaacaaccacgtttgaattacacagcagaggctattggaccactttcttgtacaaatgatggcatataccttgggggaggagctttgtctggaaatgcttatatctgggatgtgaccaatgggaaattgttgaaatcttggaaggctcataataaatctttaaactgcatgctattttcagatgacaattctcttcttatttctagttcagacgatggaatgatccatgtttggtccatgattagtctgttagatgtagaagaaacacgaggctcgccaccctcattacattgtctatcagggcacacgtcctccataacaggccttttgactacaccaaacaattacttctcaatattaatatcaagctctcttgatggcacatgcaaggtttgggattttatctctggaaagcttatgcaaactcaagtttatcctttggcaataacttccatcgcccttcaccaaagagaaaggctcttgttttgtggaacagaaaagggaacaataattgtcaacaagcttgatgttgttcttgaagaaggttcttccgttgtcattggaggccaaccacttgaattgaaaggacacaagtaa 630 0.0 MATAGDSVVQPQQPRLNYTAEAIGPLSCTNDGIYLGGGALSGNAYIWDVTNGKLLKSWKAHNKSLNCMLFSDDNSLLISSSDDGMIHVWSMISLLDVEETRGSPPSLHCLSGHTSSITGLLTTPNNYFSILISSSLDGTCKVWDFISGKLMQTQVYPLAITSIALHQRERLLFCGTEKGTIIVNKLDVVLEEGSSVVIGGQPLELKGHK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01838 209 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 110 144 - -
Pste6g01838 209 Gene3D - 7 205 IPR015943 GO:0005515
Pste6g01838 209 ProSiteProfiles Trp-Asp (WD) repeats profile. 110 153 IPR001680 GO:0005515
Pste6g01838 209 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 91 - -
Pste6g01838 209 SUPERFAMILY WD40 repeat-like 26 185 IPR036322 GO:0005515
Pste6g01838 209 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 91 IPR001680 GO:0005515
Pste6g01838 209 PANTHER WD-REPEAT PROTEIN 18 10 195 IPR045227 -
Pste6g01838 209 SMART WD40_4 51 90 IPR001680 GO:0005515
Pste6g01838 209 SMART WD40_4 103 144 IPR001680 GO:0005515
Pste6g01838 209 SMART WD40_4 147 185 IPR001680 GO:0005515
Pste6g01838 209 Pfam WD domain, G-beta repeat 52 90 IPR001680 GO:0005515
Pste6g01838 209 Pfam WD domain, G-beta repeat 107 144 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01838 Pste-Chr6 8426511 8428707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01838 32 151 Miscellaneous Gene Families AT5G08390 26.667 7.20e-10 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01838 6 8426511 8428707 Pste6g01838 6 8426511 8428707 ECH