Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01208 GTAGCGAATTCCACATTTCCTACACAAATCATCAAATTAAGTTCAAAGATGAAGAGGATTGAGATTGTTTTCCTCTTTGCTCTTGTCTCATCCACCTGCAATGCTGCTGTGAATGATTTTTGTGTAGCAAACCTAAAGGGTCCAGATAGCCCTTCAGGGTATCAGTGCAAGCCACCTAATACAGTGACGGTGGATGACTTTGTGTTCTCTGGCTTTGTGGCTGGAAACACCACAAACACTTTCAATGCTGCATTAACCTCTGCATTTGTTACTGATTTTCCAGGTGTGAATGGGCTTGGTGTATCCGCAGCACGGTTAGACATAGCACAAGGTGGATCAATCCCAATGCACACACACCCTGCGGCCACAGAGCTTCTCATAATGGTGGAAGGTCAAATCACTGCTGGCTTTATGACACCAACAGCACTTTATCAGAAGACACTAAAACCAGGAGATCTTATGGTTTTCCCACAGGGACAGTTGCATTTTCAAGTGAATTCTGGAAGCGGAAAAGCCACTGCATTTCTTGCTTTTAGTAGTGCAAACCCAGGAGCACAACTACTTGACCTTCTCCTATTTGGCAACACTTTGCCTTCTGATCTCGTCGCAAAAACTACCTTCCTTGATGTTGATCAAGTGAAGAAGGTCAAGGCTCATATCCAATCCCAGGTTCCTGGTTATTCATTTGAGAATCGAGATGAAGAACATGTTTCTCATAATTCTTGTTTCAGCACTTGTTATGCTTCTAATGTGAATGATATCTGTGTAGCAGAGCTAAAGGGTGCAGATAGCCCTACAGGGTATCACTGCAAGCCATCTGATACAGTAACAGCAAATGAATTAAAGTACAACTTGCAATCCGTAAACGTCACAATTCCTATTGGAGTTACTGCAAGTGGTGCATCCGTGGATGAGTTTCCTGCTCTGAATGGTCTTAAAATCTCTGTAGGACGTTTAGAGATGGATAGAGGTGGATTTTTCCCAATGCACACACATCCCGGTGGCCATGAAATACTAATCGTGGTTCAAGGTGAAATCACTGTGGGAATTGTCACACCTACAAAAGCTTATGTGAATGCACTCAAACCGGGAGAACTTATGGCTTTGCCCCAAGCACTCATGCATTTTCTAGTCAATTCTGGTAAGGGAAAAGCCGTTGCTTATGCCATTTATGCGCAAGGCCTCGTTTTTCATCTACTTAATCACCAATTATTTCGCAACAATATCACTTCCCCATTAATTGCACTAACTACCTTCCTTGATGTCGCCCAAGTGAGGAAGCTTAAGGCTCTTTTCGGTGGCGCTGCCTAG 1311 0.4348 VANSTFPTQIIKLSSKMKRIEIVFLFALVSSTCNAAVNDFCVANLKGPDSPSGYQCKPPNTVTVDDFVFSGFVAGNTTNTFNAALTSAFVTDFPGVNGLGVSAARLDIAQGGSIPMHTHPAATELLIMVEGQITAGFMTPTALYQKTLKPGDLMVFPQGQLHFQVNSGSGKATAFLAFSSANPGAQLLDLLLFGNTLPSDLVAKTTFLDVDQVKKVKAHIQSQVPGYSFENRDEEHVSHNSCFSTCYASNVNDICVAELKGADSPTGYHCKPSDTVTANELKYNLQSVNVTIPIGVTASGASVDEFPALNGLKISVGRLEMDRGGFFPMHTHPGGHEILIVVQGEITVGIVTPTKAYVNALKPGELMALPQALMHFLVNSGKGKAVAYAIYAQGLVFHLLNHQLFRNNITSPLIALTTFLDVAQVRKLKALFGGAA 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01208 436 CDD cupin_OxOx 248 432 IPR001929 GO:0030145
Pste6g01208 436 SUPERFAMILY RmlC-like cupins 252 429 IPR011051 -
Pste6g01208 436 CDD cupin_OxOx 35 220 IPR001929 GO:0030145
Pste6g01208 436 Gene3D Jelly Rolls 34 223 IPR014710 -
Pste6g01208 436 Gene3D Jelly Rolls 248 436 IPR014710 -
Pste6g01208 436 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 30 217 - -
Pste6g01208 436 FunFam Auxin-binding protein ABP19a 34 223 - -
Pste6g01208 436 SMART Cupin_1_3 70 214 IPR006045 -
Pste6g01208 436 SMART Cupin_1_3 283 426 IPR006045 -
Pste6g01208 436 PRINTS Germin signature 179 194 IPR001929 GO:0030145
Pste6g01208 436 PRINTS Germin signature 117 137 IPR001929 GO:0030145
Pste6g01208 436 PRINTS Germin signature 146 166 IPR001929 GO:0030145
Pste6g01208 436 SUPERFAMILY RmlC-like cupins 39 222 IPR011051 -
Pste6g01208 436 ProSitePatterns Germin family signature. 325 338 IPR019780 GO:0030145
Pste6g01208 436 Pfam Cupin 73 214 IPR006045 -
Pste6g01208 436 Pfam Cupin 293 390 IPR006045 -
Pste6g01208 436 ProSitePatterns Germin family signature. 112 125 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01208 Pste-Chr6 5133081 5137880 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01208 241 434 Miscellaneous Gene Families AT5G20630 40.000 1.64e-41 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01208 6 5133081 5137880 Pste6g01208 6 5133081 5137880 ECH