LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g00981	GTGGGAATTGGATGAGTGATAGTGTTATAGAGGTAGGGAAGAGGAAATTGGGGTGATGGATCCGTACTATCAAGATGATCGCAGCAACATCAACACTCTCTTCGTGTCCGGTCTCCCCGACGACGTGAAGCCTCGTGAGATTCACAACCTCTTCCGCCGCCGCCCTGGCTTCGACTCTTCCCAGCTCAAGTACACCGGCCGCGCCAACCAGGTTGTTGCCTTTGCCACCTTTTTCAACCACCATTCCGCTATGGCCGCCTTGCACGCCTTCAATGGTGTGAAATTTGATCCACAAACTGGATCTGTTTTACACATTGAACTTGCCAGGTCAAACTCTCGGAGGAAGCGTAAACCAGGTGGTGGAGCATACGTGGTTATAGATAAAAGGTCCAAAGGGGAACCTAATGTTCAGGGATCCTCAAGCGATGATGGTATTGTTACTTTGTTAAGTTCAAGGCAATGTGACAGTGACCCTGATGAACCTTCAGAAAGTGGCGGCAACCATGGTGATTTAGCAACCATGACAAGTGATGAAACCGCTGTTGGTTCTGACAATGTTGTATCTGTGGTGCAACATGAAAAGGGTGGTGCCAGAGGACTATGCTCCACTCTCTTTATCGCAAATCTTGGTCCAAATTGCACTGAAGATGAATTGAAGCAGGCTTTTTCTGTATATACTGGATTCAACATGGTCAAAATGCGCTCTAGAGGAGGAATGCCAGTTGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGCTAAAGTCTTGGAGGAGCTTCAGGGAAGCTTGCTGCCATCGTCAGATCGGGGTGGCATGCACATAGAATACGCAAGGTCTAAAATGAGGAAACATTAGTAGCAATTGGAAGTGGACAGTTTCCGATAATATGGTTTTCTGGCAGAGTAGTTGCAACATGGTAGGAAAAGATTGGGAAGGTGACCGATTTTGCAAAATGATTACAGTTGACTTTTTTTTGTCATGCCTATAACTATGTACTGTGTTGGAATTGAAGTGCTTGTAATTTGGTATATAGGAGCTTGCAAAACGTGGGCTCTCTAGAGGCTGTAAAACCACTGCATATATTTTTATGGCTTATGACAAATGATATCCACATCAGTAGTAAAGTGTTTTGAGGGAAAACTACACTTCTTTCTCTTAGATGGCTTTATTATACTGGC	1179	0.447	MDPYYQDDRSNINTLFVSGLPDDVKPREIHNLFRRRPGFDSSQLKYTGRANQVVAFATFFNHHSAMAALHAFNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGEPNVQGSSSDDGIVTLLSSRQCDSDPDEPSESGGNHGDLATMTSDETAVGSDNVVSVVQHEKGGARGLCSTLFIANLGPNCTEDELKQAFSVYTGFNMVKMRSRGGMPVAFADFEEIDQAAKVLEELQGSLLPSSDRGGMHIEYARSKMRKH	266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g00981	266	PANTHER	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	143	262	-	-
	Pste6g00981	266	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	184	261	IPR000504	GO:0003723
	Pste6g00981	266	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	13	92	IPR000504	GO:0003723
	Pste6g00981	266	FunFam	RNA-binding protein with multiple splicing 2	10	100	-	-
	Pste6g00981	266	MobiDBLite	consensus disorder prediction	133	157	-	-
	Pste6g00981	266	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	186	247	IPR000504	GO:0003723
	Pste6g00981	266	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	15	78	IPR000504	GO:0003723
	Pste6g00981	266	Gene3D	-	182	266	IPR012677	-
	Pste6g00981	266	SMART	rrm1_1	14	85	IPR000504	GO:0003723
	Pste6g00981	266	SMART	rrm1_1	185	257	IPR000504	GO:0003723
	Pste6g00981	266	SUPERFAMILY	RNA-binding domain, RBD	13	245	IPR035979	GO:0003676
	Pste6g00981	266	Gene3D	-	8	95	IPR012677	-
	Pste6g00981	266	FunFam	RNA-binding protein with multiple splicing	176	266	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g00981	Pste-Chr6	3919490	3922253	Dispersed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste6g00981	6	3919490	3922253	Pste6g00981	6	3919490	3922253	ECH