Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00941 GACTATGCGGTGCAAAAAGGTTTCATAGGTGTCGGGTAGGGTCTGGATATCCTTAGTTGGGAAGGCTCATCTACCTCTTCAATAAGCTTCGGTCCAACAATATGAAGAGTCTCGTGGGGTTGGGTCCGTCGGCTGCGCAGTGACTAAAACCAGAACACGAAGAGAAAATAAGTGGGCCACACACCCTCGACGCCCCAAATATAAATATAAAACCACAACACACAAAAGGCCTCGTTTCGTTTTGCCCTTTCTTCAAGCCAACCTCTGTTCCTTTCTTCCTCTCACTCTCTTCCTCCTACCGTCATGATTACAGTAAGCGTTAAATGGCAAAAGGAGCTTTTCAAAGACGTAGAAATTGACACTACCCAGTCTCCTTATGTTTTTAAATGCCAATTGTATGATTTAACTGGTGTGCCTCCCGAAAGGCAAAAAATTATGGTCAAGGGTGGTCTTCTGAAGGATGATGCTGATTGGTCAACATTAGGAGTGAAAGCGGGTCAAAAGCTAATGATGATGGGTACAGCTGATGAGGTTGTGAGGTCACCTGAGAAGGGAACTGTCTTCGTTGAAGATCTTCCTGAAGAAGAACAAGTAGTTGCTGTTGGACATACTGCTGGTCTTTTCAATTTGGGAAATACATGTTATATGAACTCAACATTGCAATGTCTCCATTCCGTGCCAGAGTTAAAGTCAGCTTTGATTAAGTACTCACATTCAGGACGAAACAATGATGTCGATCAGCCTTCTCATATGTTGACCATTGCAACCCGTGACTTATTCAACGAGCTTGATAAAAGTGTCAAGCCTGTAGCTCCAATGCAATTTTGGATGGTATTGCGGAAAAAATATCCTCAATTTGGCCAGCTGCATAATGGAGTATTCATGCAGCAGGATGCTGAAGAATGTTGGACACAACTTCTGTACACTCTCTCTCAGTCCCTCAGATCCCCAGGATCTAGTGAAAATCCTGATTCTGTGAAGGCCCTCTTTGGCATAGAACTTATCAGCAGGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCTGAAACTGAGTCTGTTTATTCACTTAAATGCCACATATCACAAGAGGTGAATCATTTGCATGAAGGGCTAAAGCATGGGTTAAAATCAGAGTTAGAAAAGGCTTCGCCTGCATTGGGCCGTAGTGCTGCATACTTGAAGGAATCACGCATCAATGCCTTGCCAAGGTATTTGACTATTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAATCAAAAGGCTAAGATTTTGCGGAAAGTGGATTATCCTCTGGAGTTGGATGTTTATGATTTTTGTTCAGAAGATCTTCGTAAAAAATTAGAAACTCCTAGACAGATCCTAAGAAATGAGGAAGGCAAAAAGCTTGGTCTGAAAGTGGATGAAAAAAGCTCTGTTCAGAAAGAAAATGACGTACAGATGTCTGATGCCGAGGGATCATCAAATGGAGGGGAGCCATCTCTAGTTCCGATGGATGAGGGTGAAAAGGAAACACAGATGACAGGGATTTATGATTTGGTTGCTGTATTAACCCACAAGGGCAGAAGTGCTGATTCAGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATAGAGTTTGATGATGACAATCCCAAACCAAAATTAGAAGAAGACATCACTAGACTATCAGGAGGAGGTGATTGGCATATGGCGTATATAATCATGTACAAGGCTCGTGGTGTATCTGTGTAATTGCTAGGAAGAGCCCGGTGTGGTGTTTTTACCTCAGATTCAAGGATTTTGAGGGAGAAATGGTATTGTACTCCTGAGGTTTGATGCTTGCTAGTCAGTATTTATTTGTTTTAGGTATTGTATTTTTTTTAAAGCATGTATAAGGATTTGAATTGAAGCACGGTACCCCTTCCATCGACAGAGGCAGTTGAATATCAAGTTACATTTCTACGAAGCCTACAATCTTTCTATGAATTAAACGCGACAGCAACGCCCTTTATGAAATGCTTATTGATAATGATGACATACATACAGTCAGGCTCAAAACCTGATACTAACTTGTTTAATTTGATTATGATAAATGAATAATTTTTATACGATTTTAAGGATTTCCACCCCCCTCCTGTCTTGGCATTGTAATTTTTGTTCAGTTTATTGTAAAATACCAAGTTATTAATTTTGTCGAATTAAA 2194 0.4075 MITVSVKWQKELFKDVEIDTTQSPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDADWSTLGVKAGQKLMMMGTADEVVRSPEKGTVFVEDLPEEEQVVAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALIKYSHSGRNNDVDQPSHMLTIATRDLFNELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSPGSSENPDSVKALFGIELISRIHCQESNEESSETESVYSLKCHISQEVNHLHEGLKHGLKSELEKASPALGRSAAYLKESRINALPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSEDLRKKLETPRQILRNEEGKKLGLKVDEKSSVQKENDVQMSDAEGSSNGGEPSLVPMDEGEKETQMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPKLEEDITRLSGGGDWHMAYIIMYKARGVSV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00941 479 ProSitePatterns Ubiquitin domain signature. 28 53 IPR019954 -
Pste6g00941 479 ProSiteProfiles Ubiquitin domain profile. 2 71 IPR000626 GO:0005515
Pste6g00941 479 Gene3D - 1 73 - -
Pste6g00941 479 CDD Ubl_USP14_like 1 75 - -
Pste6g00941 479 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 477 IPR044635 GO:0004843|GO:0016579|GO:0043161
Pste6g00941 479 Pfam Ubiquitin family 2 73 IPR000626 GO:0005515
Pste6g00941 479 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Pste6g00941 479 FunFam Ubiquitin carboxyl-terminal hydrolase 14 97 479 - -
Pste6g00941 479 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 410 428 IPR018200 GO:0004843|GO:0006511
Pste6g00941 479 SMART ubq_7 2 73 IPR000626 GO:0005515
Pste6g00941 479 Pfam Ubiquitin carboxyl-terminal hydrolase 105 472 IPR001394 GO:0004843|GO:0016579
Pste6g00941 479 MobiDBLite consensus disorder prediction 365 396 - -
Pste6g00941 479 CDD Peptidase_C19A 105 473 - -
Pste6g00941 479 FunFam Ubiquitin carboxyl-terminal hydrolase 14 1 73 - -
Pste6g00941 479 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 105 120 IPR018200 GO:0004843|GO:0006511
Pste6g00941 479 SUPERFAMILY Cysteine proteinases 102 473 IPR038765 -
Pste6g00941 479 Gene3D Cysteine proteinases 98 478 - -
Pste6g00941 479 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 104 475 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00941 Pste-Chr6 3708594 3721059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00941 104 472 Miscellaneous Gene Families AT2G24640 21.447 1.75e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00941 6 3708594 3721059 Pste6g00941 6 3708594 3721059 ECH