Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00614 ATGGAATTGATTTCGGGTCTACCGGAGGACGTAGCACGAGACTGTCTGATTCGGGTTTCATATAATCAGTTCCCCACGGTGGCGTCGGTATGCAAACTCTGGAAATCGGAGATTCACGCGCCGGAGTTCCACCGTCAACGGCGCAGCACAGGGCAAACCCAGCACATAGTAGTGATGGTTCAAGCGCGGGGTGAACCGCAAATCGGTTCGACCAAGCGCGTGACTAACTCGATTTACACGCTGACCGTGTTAGAACTGGAAACGGGTAACTGGAGCGAGTTGCCACCACCGCCGGAATTTCATTCTGGGTTACCCATGTTCTGTCAGTTAGTGAGTGTCGGATACGATCTGATTGTGTTGGGAGGGTTGGACCCCAATTCATGGAAAGCGTCCAATTCTGTGTTTGTGTATAATTTCTTGTCGGCAAAGTGGCGCCGCGGTGCGGACATGCCTGGTGTGCCCCGCACGTTTTTCGCGTGCGCCTCGGATTCTCAGGGTACAGTTTTTGTCGCCGGCGGACACGACAACGAGAAGAACGCGCTGAGGTCGGCGCTGGCCTATGATGTTATGTCGGACCGGTGGGTTCCGCTTCAAGACATGCAGGCGGAGCGCGACGAATGCAAGGGGGTCTTCCGCCGCGGGAGGTTCGTCGTCGTCGGGGGTTACCCGACGGAGACGCAGGGAAGGTTCGGGAGAAGTGCAGAGACATTCGATCCTGCCATGTGGAGCTGGAGCGAAGTGAAAGAGGACTTCTTGGATTGCGCCACGTGTCCGAGAATGTTTGTCGGTGGTGGTGATGACGAGGCGGTGTTCTTGTGCAGCGGCGGGGACTTGAAGGAGTTACGCGGGGACGCGTGGCAGAAGATAGCGACCGTGCCCGCTGAGATATGCAACGTGGCTTACGTTGGTGCGTTTCATGGGACGCTGGTCTTCATTGGATCTAGCGGCTACGGTGAAGTCCACTCTGCATTTGCATTCCATTTCAATAGTTGCAATTGGACAAAGCTTCGTTGCCCAGAAGCCTTCAGAAGCCATGTCCAAACCGGTTGTGTTTTCCAGATTTAA 1065 0.5521 MELISGLPEDVARDCLIRVSYNQFPTVASVCKLWKSEIHAPEFHRQRRSTGQTQHIVVMVQARGEPQIGSTKRVTNSIYTLTVLELETGNWSELPPPPEFHSGLPMFCQLVSVGYDLIVLGGLDPNSWKASNSVFVYNFLSAKWRRGADMPGVPRTFFACASDSQGTVFVAGGHDNEKNALRSALAYDVMSDRWVPLQDMQAERDECKGVFRRGRFVVVGGYPTETQGRFGRSAETFDPAMWSWSEVKEDFLDCATCPRMFVGGGDDEAVFLCSGGDLKELRGDAWQKIATVPAEICNVAYVGAFHGTLVFIGSSGYGEVHSAFAFHFNSCNWTKLRCPEAFRSHVQTGCVFQI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00614 354 Gene3D - 47 348 IPR015915 GO:0005515
Pste6g00614 354 SUPERFAMILY Kelch motif 77 336 IPR015915 GO:0005515
Pste6g00614 354 SUPERFAMILY F-box domain 3 47 IPR036047 GO:0005515
Pste6g00614 354 CDD F-box_AtAFR-like 3 47 - -
Pste6g00614 354 SMART kelc_smart 167 214 IPR006652 GO:0005515
Pste6g00614 354 SMART kelc_smart 116 165 IPR006652 GO:0005515
Pste6g00614 354 PANTHER OS02G0208700 PROTEIN 2 354 IPR044595 GO:0080037|GO:2000762
Pste6g00614 354 Pfam Kelch motif 105 155 - -
Pste6g00614 354 Pfam Kelch motif 165 201 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00614 Pste-Chr6 2305210 2306274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00614 7 209 Miscellaneous Gene Families AT4G33900 27.397 4.91e-08 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00614 6 2305210 2306274 Pste6g00614 6 2305210 2306274 ECH
Pste3g03674 3 28996491 29000409 Pste6g00614 6 2305210 2306274 PCT