Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00488 GTATTATAACAGGAATTTTAAAATATCGAAAGTGAAGGAATTGGATTTGGTTTGGGTTTATTTCACCGGCGGCGAAGGTGGTGGAAATTGCAAACCCTAATTTGAGAAAAAAAAATCAGCGATCGGCGATTGGGAAGGGAGGCGAAGATGGTTCTAGCGGAGTTAGGTGGGAGCATTTCGCGTGCTCTTCAGCAGATGAGCAATGCGACGATCATCGACGAGAAGGTTCTGAACGATTGCCTGAACGACATCACGCGCGCGCTTCTCCAATCCGATGTTCAATTCAAGCTCGTCCGCGACATGCAGACGAACATCAAGAACATCGTCAACCTCGAAGACCTCGCCGCCGGCCACAACAAGCGCCGCATCATCCAGCAGGCCGTCTTCAACGAACTCTGCAAGATCCTCGATCCCGGCAAACCCTCCTTCACTCCCAAAAAGTCCAAAACCAGCGTCGTCATGTTCGTTGGCCTCCAAGGATCTGGTAAAACGACGACGTGTACCAAATACGCCTTTTATCATCAGAAGAAAGGGTGGAAGCCTGCTCTGGTCTGCGCTGATACTTTCAGAGCTGGTGCTTTTGATCAATTGAAACAAAACGCCACTAAAGCTAAGATCCCTTTCTATGGAAGCTACATGGAGTCAGATCCCGTGAAAATTGCTGTGGAAGGGGTTGAAAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGACACTAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCAGAAGCAACGAAACCAGATCTTGTTATATTCGTTATGGATAGCAGCATTGGTCAGGCTGCTTTTGATCAAGCTCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTCATTGTCACTAAAATGGATGGCCACGCAAAGGGTGGTGGTGCTCTTAGTGCTGTAGCAGCAACAAAGAGTCCTGTCATTTTCATTGGGACTGGAGAACACATGGATGAATTTGAAGTTTTTGATGTTAAACCATTTGTCAGTCGTCTATTAGGCATGGGAGACTGGTCTGGATTCATGGACAAAATTCATGAAGTCGTTCCTATGGATCAACAGCCTGAACTGCTTCAAAAGCTGTCAGAAGGAAACTTTACGTTGAGGATTATGTATGAGCAGTTTCAAAACATACTTAAAATGGGTCCCATAAGCCAGGTCTTTTCTATGCTACCAGGATTTAGTGCTGAATTGATGCCAAAAGGCCAGTTGGATAGTTCAAACCCAAAGCTCATGAATGAATCACGTATGATGCGAATAGCTCGAGGTTCCGGTCGTGCAGTTAGGGAAGTAATGGAAATGTTGGAAGAGTACAAACGTCTTGCCAAGATATGGAGCAAAATGAAAGGGCTTAAAATACCGAAGAAGGGTGAAATGAGCGCCTTATCCCGAAATATGAATGCTCAGCACATGAGCAAAGTCCTCCCTCCTCAGATGCTAAAGCAAATCGGAGGCATGGGTGGATTACAAAGCTTGATGAAGCAGATGGGATCTGCCAAAGATATGATGGGAATGTTTGGCGGTGGTGATAAGTAGATTCACTGTATCATATGAGCTGAGGATTGTTTCTGATCACTACTACACACTCTTATAGTTCACAGGAGTTTGATTCATCATTGTGCAATTATGCGGTTCGCATTGAATTCAGATGTATTATTTTGTGTCAATCAATCTGCAGCAATCTCGATGGGCTGGGGAATACTTCATTTCAGTTTTACCTTGACAAACCTTCTGTAAAACTAAACCCCCTTGTTTTCCTTTTTCTGTATATTTGCTAGTCTTTAGGTGAAGTTGAAGCAATATAAATGCGAATGGAGGTTTTCTTGTAGGTGTAACATTATAAATAACTTAGGCCCCATTCGGGGTAGTTCTGAGTTTCTGGTTTTTGGTTTTGAAATGTATTTTGAAAATAGAAATTTGTTTGGCAAAAATGGTTCTGTTTTGTTTTTTACTCATTTTTGAAATAATTTTCATTCAATTTAAAAACAATAAAATTTGGTTTTTAGATTTCTGTTTCTATTTTTATCTAAGTTCATTATTTAACGTCATTTATCATCATTGACCATCACTTCTGACCAAAAGTCATCGACTGCCATTTTGACGGTCATCGGTCATCACCTCTGATCGGCGGTCACCAGCCTCCACCTTTAATTAGCAGTCACAGGTCGTCATCTTTGATTGACAGTCACCGAT 2226 0.4227 MVLAELGGSISRALQQMSNATIIDEKVLNDCLNDITRALLQSDVQFKLVRDMQTNIKNIVNLEDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKSKTSVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGQLDSSNPKLMNESRMMRIARGSGRAVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSAKDMMGMFGGGDK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00488 473 SUPERFAMILY Signal peptide-binding domain 298 411 IPR036891 GO:0006614|GO:0008312|GO:0048500
Pste6g00488 473 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Pste6g00488 473 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Pste6g00488 473 SMART AAA_5 100 277 IPR003593 GO:0016887
Pste6g00488 473 Gene3D - 5 306 IPR042101 -
Pste6g00488 473 Pfam Signal peptide binding domain 369 405 IPR004125 GO:0006614|GO:0008312|GO:0048500
Pste6g00488 473 Pfam Signal peptide binding domain 327 360 IPR004125 GO:0006614|GO:0008312|GO:0048500
Pste6g00488 473 NCBIfam signal recognition particle protein SRP54 2 373 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Pste6g00488 473 FunFam Signal recognition particle GTPase 5 97 - -
Pste6g00488 473 CDD SRP54_G 102 294 - -
Pste6g00488 473 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Pste6g00488 473 Gene3D - 91 285 IPR027417 -
Pste6g00488 473 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Pste6g00488 473 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 462 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Pste6g00488 473 FunFam Signal recognition particle 54 kDa subunit 90 285 - -
Pste6g00488 473 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 455 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Pste6g00488 473 Gene3D - 366 411 IPR036891 GO:0006614|GO:0008312|GO:0048500
Pste6g00488 473 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Pste6g00488 473 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Pste6g00488 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 298 IPR027417 -
Pste6g00488 473 Gene3D - 311 365 IPR036891 GO:0006614|GO:0008312|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00488 Pste-Chr6 1821285 1824476 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00488 6 1821285 1824476 Pste6g00488 6 1821285 1824476 ECH