Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00454 ATGAGGTTCGGTTACGAGGCACGTCCCGACCCACCACTTTTTCTCGCACTCACTCCCAAGGCTTTCAACAACTTCACCTGCAACTGCTACACGAGCCACTCGTTTGCATTTGACCGTTTGCGTCATGCACTCGTATTTATATGTTACTTGAAATATGCTGTGCAGTATTGCTTAAGACAAATATGGCAAGTGCTGATTATGGTGTGGTTGCTGATATTTCAAGCTGATATGGCATTTTTGGTCTTTGGCTTTTTTATGAGTTTTTTGACTTATATTGGTGTTGGGAATATTTTGTGGATGGGAGGAGCGTGTTCTAGGAAGCAAGAACGGTGCAATGAAGATAGTCTTACCAGAGGACTATCACGAAGATATTACAAATGCGGGAGTTTGAAATGGTGGACATCCTCTTTTTCTTATCCATCTGTAGATTTTCACTTACGAAAAGGAGAATGCCCATCACTGTTGAACTTGTGTATACAGAAAATAAACGAGGATATTGATAAATATAACACATTTTCTATGCTGCCACGGGATATAAGTCAGCTAATTTTTAATAATTTGGTTTACTCCCGACGTCTAACCAGTGCTTCCCTAGAAGGCTTTCGAGATTGTGCTCTCCAGGATATTTACTTGGGAGAATATGACGGTGTTAATGATAATTGGATGGCCATCATCTCATCCCAGGGTTCATCTTTACTTTCTATAGATCTTTCTGGGTCTGATGTCACTGATTTTGGGCTTACATACCTTAAAGATTGTGAAAGCCTCATTTCCTTAAATCTAAACTATTGTGATCAAATTTCAGATCATGGACTAGATTGTATCAGTGGTCTGTCAAACTTGACAAGTTTGAGTTTTAGAAGAAATGATTCAATTTCTGCTAAAGGAATGAGTACCTTTTCTGGTCTTGTTAACTTGGTCAAGTTGGATTTGGAGAGATGTCCTGGGATTCATGGAGGCCTTGTCTATCTTCGAGGTTTGACCAAGTTGGAATCTCTTAATTTAAAGTGGTGTAATTGCATAACAGATTATGATATGAAACCTCTTTCAGAGCTTGCAAGCCTGAAAAATCTAGAGATTTCTTCCAGTAAAGTCACTGATTATGGCATCAGTTTCCTAAAAGGGTTACAGAAGCTTGCCCTGTTAAATTTGGAAGGGTGCCTTGTAACAGCTGCATGCTTGGATTCTCTTGCAGAGCTTCCCACATTGTCAAACTTGAATCTTAATAGATGTAATCTCTCTGACAATGGATGCAAAAATTTTTCACGACTGGAGAACTTGAAAGTATTAAACATGGGGTTTAACATGATAACAGATGCTTGTTTAGTTCACTTGAAAGGATTGACAAAGTTGGAGAGCTTGAACCTTGATTCTTGTAAGATTGGTGATGAAGGATTAGTCAATTTGGCTGGCCATAAGCAATTGAACTGCTTGGAATTGTCTGATACAGAAGTTGGAAGCAATGGGTTACACCATTTATCAGGATTGTCTAATCTGCAGAAAATAAATCTGTCATTTACCATGGTTAGTGATAGCAGTTTAAGAAAATTGTGTGGACTCTCATCACTGAAGTCACTTAATTTGGATGCTTACCAAATTACTGATTCTGGACTGGCAAACATTACAAGTTTGACTGGCCTCACTGACCTGGATTTGTTTGGTGCACGAATCACAGATTTTGGGACAAACTATTTGAAAAAATTCAAGAACCTGAGGTCCTTGGAAATATGTGGTGGAGTATTAACTGATGCTGGTGTGAAAAATATCAAAGAGCTTTCTTCTTTAGTGTGCTTAAATTTATCACAAAACAGCAACCTTACAGACAAAACCCTGGAGTTAATTTCAGGTCTTACTGGGTTGATTTCTTTGAGTGTTTCAAATTGTCGTATCACCAATGCTGGACTGCAGCATTTGAAACCATTGAAGAACTTGAGATCTCTGACATTGGAGTCCTGTAAGGTGACAGCAAGTGACATCAAGAAACTGAAATTAATGTACCTCCCGAATCTGGTAAGCTTTCGGCCTGGGTAGTTAATGCAGCATTCTGATAGTGTATATGTATATATGTCAATCATACTCTGATGTATGCTAGAGAAGAATACAAAGACAAACCTAAAATTGTATATAGGCTATAATAATGGCTTTATGGAAGCTTTCTTTTGTTTTATTGTAAAAGTAGCACTATACCGTGCTAATGGGTCAACTTGCCCTTTATGTATGTTTTGAAATCACTCATGTATATATATAACTAAATGACACTACTACACATTTTAAAACCATATTTCGTTGAGCA 2293 0.379 MRFGYEARPDPPLFLALTPKAFNNFTCNCYTSHSFAFDRLRHALVFICYLKYAVQYCLRQIWQVLIMVWLLIFQADMAFLVFGFFMSFLTYIGVGNILWMGGACSRKQERCNEDSLTRGLSRRYYKCGSLKWWTSSFSYPSVDFHLRKGECPSLLNLCIQKINEDIDKYNTFSMLPRDISQLIFNNLVYSRRLTSASLEGFRDCALQDIYLGEYDGVNDNWMAIISSQGSSLLSIDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDHGLDCISGLSNLTSLSFRRNDSISAKGMSTFSGLVNLVKLDLERCPGIHGGLVYLRGLTKLESLNLKWCNCITDYDMKPLSELASLKNLEISSSKVTDYGISFLKGLQKLALLNLEGCLVTAACLDSLAELPTLSNLNLNRCNLSDNGCKNFSRLENLKVLNMGFNMITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGHKQLNCLELSDTEVGSNGLHHLSGLSNLQKINLSFTMVSDSSLRKLCGLSSLKSLNLDAYQITDSGLANITSLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLISLSVSNCRITNAGLQHLKPLKNLRSLTLESCKVTASDIKKLKLMYLPNLVSFRPG 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00454 676 SUPERFAMILY L domain-like 229 439 - -
Pste6g00454 676 SMART LRR_CC_2 327 352 IPR006553 -
Pste6g00454 676 SMART LRR_CC_2 496 520 IPR006553 -
Pste6g00454 676 SMART LRR_CC_2 253 278 IPR006553 -
Pste6g00454 676 SMART LRR_CC_2 448 472 IPR006553 -
Pste6g00454 676 SMART LRR_CC_2 617 641 IPR006553 -
Pste6g00454 676 SMART LRR_CC_2 400 424 IPR006553 -
Pste6g00454 676 SMART LRR_CC_2 568 592 IPR006553 -
Pste6g00454 676 SMART LRR_CC_2 521 544 IPR006553 -
Pste6g00454 676 FunFam Leucine-rich repeat family protein 319 397 - -
Pste6g00454 676 SUPERFAMILY RNI-like 372 662 - -
Pste6g00454 676 Gene3D Ribonuclease Inhibitor 580 671 IPR032675 -
Pste6g00454 676 Gene3D Ribonuclease Inhibitor 498 579 IPR032675 -
Pste6g00454 676 Gene3D Ribonuclease Inhibitor 397 485 IPR032675 -
Pste6g00454 676 Gene3D Ribonuclease Inhibitor 319 396 IPR032675 -
Pste6g00454 676 Gene3D Ribonuclease Inhibitor 220 318 IPR032675 -
Pste6g00454 676 PANTHER UNCHARACTERIZED 143 343 - -
Pste6g00454 676 FunFam Leucine-rich repeat family protein 573 672 - -
Pste6g00454 676 Pfam Leucine Rich repeat 328 349 IPR001611 GO:0005515
Pste6g00454 676 Pfam Leucine Rich repeat 279 300 IPR001611 GO:0005515
Pste6g00454 676 Pfam Leucine Rich repeat 253 276 IPR001611 GO:0005515
Pste6g00454 676 FunFam Predicted protein 217 318 - -
Pste6g00454 676 Pfam Leucine rich repeat 401 461 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00454 Pste-Chr6 1703480 1715747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00454 252 603 Receptor kinase-like Gene Family AT1G75820 25.990 6.57e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00454 6 1703480 1715747 Pste6g00454 6 1703480 1715747 ECH