Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02735 GTGGCAGTGCTTTTGCTACTAGCAGTAAGCACTGCTGTGGAAAGCAATGGAGAAGACAATAGTGGACCATGTAAACAGAATGCATTGAATGTAAGGCCTCACAGTGTATCGATCTTAGAATTTGGGGCGGTTGGAGATGGAATAACACTGAACACAGTTGCATTCGAAAATGCAGTATTTTATCTTAAGTCATTTGCTGATAAAGGGGGTGCCCAACTATATGTTCCATCTGGCTCATGGCTTACTGGGAGTTTTAATCTCACCAGTCACCTCACTCTGTTCCTTGAGAGAGGCGCTACCATCATTGCACCTCAGGATTATTCTCACTGGGAAGTAGTAGATTCCCTGCCTTCTTATGGTAGAGGAATTGGGAGATATCGTAGCTTGATCTATGGACAGAATATTAGCGATGTGATAATTACAGGTGATAATGGAACTATAGATGGGCAAGGCTCTGTCTGGTGGGAGTTGTTCAATTCTAATTCCTTAAATTACAGTCGACCAAATCTTATAGAATTTGTGAATTCTGTTGATGTCATAATTTCCAATTTGACTTTTCTAGACTCTCCTGCTTGGGACATCCATCCAGTATATTGCAGTAACGTTCAAATTCAAAACATAACTTCTCGTGCACCAGCAGAATCCCCGTACACCAGTGGTATAGTTCCAGATTCTTCTCAGTATGTTTGCGTTGAGAACAGTAACATTAGCACTGGACATGATGCAATTGTGTTGAAGAGTGGTTGGGATGAGTATGGTATTACGTATGGAAAACCAACATCGAGTATCCACATCAGTAATGTTCACTTACAATCATCAAAAGGTGCTGGCTTGGCATTTGGGAGTGAGATGTCTGGGGGAATATCTGATATTATTGTAGAGAAGCTTCATATACTCAACTCGCCTATTGGCATTGAATTGAAAACAACTACCGGTAGAGGTGGCTATATGAAAAGAATATACATTTCTGATGCAGAATTGGAAAATATTCACTTGGCAATCAGCATGACAGGATTCTCCGGATTCCATCCAGATGACAAGTATGACTCAAGTGCACTTCCAGTTGTTGAGAGCATTACTTTCAAGAATGTAGTTGGCGAAAATATTAGTATTGCAGGGAATTTTTCAGGAATAGTTGAATCACCATTCTCAACAATCTGTCTCTCAAAAGTGATTTTTTCTCTCAGTTCCGAGCCAACTCCTTCGTGGTTCTGTTCTAATGTTTTTGGTTTCTCTGAAGAGGTGATTCCTGAGCCATGCCCTGATCTCCAGAGTTCGTATTCCAAGTTTTCGTTTTCTTGCTTTTCTTCCTTATATCCACACTTTAGTAATGTCTCAGCCTTTTTTGATCATCATCCACAAGAATGA 1368 0.4042 VAVLLLLAVSTAVESNGEDNSGPCKQNALNVRPHSVSILEFGAVGDGITLNTVAFENAVFYLKSFADKGGAQLYVPSGSWLTGSFNLTSHLTLFLERGATIIAPQDYSHWEVVDSLPSYGRGIGRYRSLIYGQNISDVIITGDNGTIDGQGSVWWELFNSNSLNYSRPNLIEFVNSVDVIISNLTFLDSPAWDIHPVYCSNVQIQNITSRAPAESPYTSGIVPDSSQYVCVENSNISTGHDAIVLKSGWDEYGITYGKPTSSIHISNVHLQSSKGAGLAFGSEMSGGISDIIVEKLHILNSPIGIELKTTTGRGGYMKRIYISDAELENIHLAISMTGFSGFHPDDKYDSSALPVVESITFKNVVGENISIAGNFSGIVESPFSTICLSKVIFSLSSEPTPSWFCSNVFGFSEEVIPEPCPDLQSSYSKFSFSCFSSLYPHFSNVSAFFDHHPQE 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02735 455 SMART pbh1 226 247 IPR006626 -
Pste5g02735 455 SMART pbh1 260 282 IPR006626 -
Pste5g02735 455 SMART pbh1 199 225 IPR006626 -
Pste5g02735 455 SMART pbh1 288 309 IPR006626 -
Pste5g02735 455 SMART pbh1 351 373 IPR006626 -
Pste5g02735 455 Pfam Glycosyl hydrolases family 28 127 372 IPR000743 GO:0004650|GO:0005975
Pste5g02735 455 SUPERFAMILY Pectin lyase-like 26 424 IPR011050 -
Pste5g02735 455 Gene3D - 20 409 IPR012334 -
Pste5g02735 455 PANTHER PECTIN LYASE-RELATED 4 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02735 Pste-Chr5 19524530 19526707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02735 1 449 Glycoside Hydrolase AT3G16850 58.553 0.0 533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02735 5 19524530 19526707 Pste5g02735 5 19524530 19526707 ECH
Pste5g02735 5 19524530 19526707 Pste4g02385 4 16987404 16990062 PCT