Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02728 GCCCGAGCTAAACTCGATATCCCCTTGTAGCTGTGTGTTATCGCTGGGTCTGATTTCATCTCTTCCTTTTCTTTCTCTCATTGCACAACACAACCACTCTCACTCTCCAATTCCGATTCCTTCTTAATCCAAAACTCAATGACCCTATCATTCGCCCGCTGCTGCTTCTGCTTCTGCTTCCGATTCCCCATGCTTTCGGGATTGCAGATTCAATGAGATTGGTCTCTTCCAATAAAACATGGCCTCTGCATCCTCCATGTCAGTTTCTTTAGAATGCGTGAATGCCTGCAAGCTGTGGAGAGGGGATGGAAGCGGAAGATTCGACTGTAGTCTTCTATCGTGTGCGTGGAAAGCTCCCAGGGTTCTCACCGGCTTTCTTGCCAGCACTGCTCATCCTCATCACTGTTCCGACTTCTCCACTGCCCATAACGGACCAAGGAACCGGTATAATTTTGGGTGTCAAGCCTTTAGTATAGGTCGTTCATGTCCGGATGAACCAATTGATATCATATTTCCTGAAGGATTATCTAGATCTATCTTGTCTCGAGTTGGTCCCAGAAGATGGCAATCATGTTGTTCTTTAGCTTTGGACACTGTCACTGACTTTTCCGAAGAAAGTTTGTGGGAGGATCTTAAACCCGCTATCTCGTACCTGTCTTCTAAAGAACTGGAGTTAGTTTACAATGCTTTTATGTTGGCTTTTAAAGCTCATGATGGTCAGAAAAGACGTAGCGGTGAACCCTTCATCATTCACCCTGTTGAGGTTGCACGTATTCTAGGAGAACTTGAACTTGACTGGGAGTCAGTTGCTGCTGGATTACTTCATGATACAGTCGAGGATACAAATGTTGTAACTTTTGAGAGGATAGAGGAAGAATTTGGTGCTACTGTGCGCCACATCGTGGAAGGAGAGACTAAGGTGTCAAAATTGGGAAAGTTGAAGTACAAGAATGAAAACAATTCTGTTCAAGATGTGAAAGCAGAGGATCTTCGACAAATGTTTCTGGCTATGACAGAAGAGGTTCGTGTTATAATTGTCAAATTAGCAGACAGGCTGCATAACATGCGCACTCTGTCACATATGCCTCCACATAAACAGACCTGGGGTGGTGGTTGCCTGGTTGGGTTAAAGCCCTCCCCAGGACAATGGTTCATTATTGCAGGACTTGGACCCCTGGCATTGCAGACTAGCATTGCGATGGAAACGTTGCAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAACCTATCATTTATGTACACAAATGCGGAAGACTATGCTAAGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTCTTGAGGCAAACAAAATGTTGATGAAGAAAATCCAAGATGATCAATTCTTAGACCTTCTAACTGTTAAAACAGAAGTTCGTGCTGTATGTAAAGAGCCTTACAGTATCTATAAAGCTGTGCTCAAATCGAAAAGTTCTATCAGTGAGGTTAACCAAATTTCACAGCTTCGTATTATTATCAAACCAAAGCCATGCATTGGGGTTGGGCCTCTATGCAATCCGCAGCAGATTTGCTATCATGTTCTGGGATTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTTAAGGATTATATAGCAACTCCTAAACCAAATGGCTACCAAAGTCTTCATACCACTGTGATTCCATTTTTGTACGAGAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTAATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGAAGAGAATTTGTCACAGGCTTAGTTGGAAGTGCAACACCAAGTAGTAAAACTTCAAGAGGGAAGACTGTTTGCCTTAACAATGCCAATATTGCACTCAGAGCTGTTGCCTTAGTGATTGGCTGGCTAAATGCAATTAGAGAGTGGCAAGAAGAATTTGTTGGCAACATGAGTTCGAGGGAATTTGTGGACACTATTACAAGAGATCTGCTGGGCAGTCGTGTCTTTGTGTTTACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGACTATGCTTATATGATACACACTGAAATAGGCAACAAGATGGTAGCTGCAAAGGTAAATGGAAACCTTGTTTCTCCTGCTCATGTACTTGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCCAGCAAATCAGCTTTTCAGAGGCATAAGCAGTGGTTGCAACATGCTAAAACCCGTAGTGCGAGACACAAAATAATGAAGTTTCTGAGGGAGCAAGCTGCACGCTCTGCCGCTGATATCACTACTGAAGCAGTCAATGACTTTGTTGCCGATTCTGACGGTGATAGTGAATCTGAAGAACTGTCAAAAGATTCCAGTGGTTCCAAATATAGGTGGAGTAAAATGTTTGTGAATAGAGTTGAAATAACAACATCGGGAAGAAGTGAGACTGTCCTCCAAAGTAACAACGGAAATGCTGGGATTCCCAAGGTCAATGGCAAACATAATAAGCATGTGCAGCATGAAAGTTTCAATGGCAAAGGGGAGATGTTACTTCAGGGAAACCTTGTTGCAAAGATGATTCAAGTTAACGTTCCAAGATATAAGGAGGTCCTGCCAGGTTTAGAAAGTTGGCAAGCACAGAAAATTGCTTCTTGGCACAATATGGAAGGGCATTCCATCCAATGGTTATCTGTTGTATGTATAGATCGAAGAGGTAAGCTTGCTCTTTTGAATACTATTGATTAG 2785 0.4259 MASASSMSVSLECVNACKLWRGDGSGRFDCSLLSCAWKAPRVLTGFLASTAHPHHCSDFSTAHNGPRNRYNFGCQAFSIGRSCPDEPIDIIFPEGLSRSILSRVGPRRWQSCCSLALDTVTDFSEESLWEDLKPAISYLSSKELELVYNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESVAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENNSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTWGGGCLVGLKPSPGQWFIIAGLGPLALQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELLEANKMLMKKIQDDQFLDLLTVKTEVRAVCKEPYSIYKAVLKSKSSISEVNQISQLRIIIKPKPCIGVGPLCNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSSKTSRGKTVCLNNANIALRAVALVIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPAHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSAADITTEAVNDFVADSDGDSESEELSKDSSGSKYRWSKMFVNRVEITTSGRSETVLQSNNGNAGIPKVNGKHNKHVQHESFNGKGEMLLQGNLVAKMIQVNVPRYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRRGKLALLNTID 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02728 848 FunFam GTP pyrophosphokinase (RelA/SpoT) 589 663 - -
Pste5g02728 848 SUPERFAMILY HD-domain/PDEase-like 134 288 - -
Pste5g02728 848 ProSiteProfiles TGS domain profile. 593 656 IPR004095 -
Pste5g02728 848 CDD NT_Rel-Spo_like 395 515 IPR007685 GO:0015969
Pste5g02728 848 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 315 843 - -
Pste5g02728 848 FunFam GTP pyrophosphokinase RelA 128 289 - -
Pste5g02728 848 Gene3D Hypothetical protein af1432 124 351 - -
Pste5g02728 848 Pfam HD domain 150 287 - -
Pste5g02728 848 Pfam TGS domain 597 656 IPR004095 -
Pste5g02728 848 CDD TGS_RSH 598 656 IPR033655 -
Pste5g02728 848 Pfam Region found in RelA / SpoT proteins 405 521 IPR007685 GO:0015969
Pste5g02728 848 Coils Coil 360 387 - -
Pste5g02728 848 SUPERFAMILY HD-domain/PDEase-like 314 351 - -
Pste5g02728 848 Gene3D - 590 665 IPR012675 -
Pste5g02728 848 ProSiteProfiles HD domain profile. 169 276 IPR006674 -
Pste5g02728 848 SMART RelA_SpoT_2 405 527 IPR007685 GO:0015969
Pste5g02728 848 CDD HDc 167 282 IPR003607 -
Pste5g02728 848 Gene3D Beta Polymerase, domain 2 353 507 IPR043519 -
Pste5g02728 848 SUPERFAMILY Nucleotidyltransferase 355 525 IPR043519 -
Pste5g02728 848 SUPERFAMILY TGS-like 584 656 IPR012676 -
Pste5g02728 848 SMART hd_13 165 285 IPR003607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02728 Pste-Chr5 19447935 19454878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02728 179 523 EF-hand Containing Proteins AT3G17470 27.606 1.04e-31 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02728 5 19447935 19454878 Pste5g02728 5 19447935 19454878 ECH