Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02674 ATGGCTGTGGTGGCAGTGCAGCAGTTCCTCTGCTTCTCAGAATCAAATTGGAGGAACATAACAAGGCCATGCGTTCGCCTTCACACTGCAATTCTTCTACGTTCACGCAAAAGGATTCAATATTCTCTTATTTCATGCTCTTCATCACAGACCCCAGAAGCTGACACTCAAACTGCTGAATCGTGTGTCAATTTGGGTCTTGAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAACCCAATTTGAAACAGCACTTTCCTTGAACCCTAATCCTGTGGAGGCCCAAGCTGCGCTCTATAACAAAGCTTGCTGCCATGCATATAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAGGGAATACAATCTAAAATTTGGTACAATTCTCAATGATCCCGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCTAGGCTGGGTGGGGAAGATGTTGGCTACGGTTTTCGGAGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCTTTTCGTGGGATTAGGAGATTCTTTTATGTAGCACTGACAGCAGCTGCAGGAATATCATTGTTTTTCACTGTGCCCAGGCTATTTTATGCAATTAATGGTGGTGACGGTGCTCCTGATCTCCTGGCAACTGCTGGAAATGCTGCCATTAATATTGCAGGTATTGTTGTTTTCGTTGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTTGCTCAAATATCTCGAGATGAGACACTATCAAGATTGCCTTTGCGCCTTTCAACTAATCGTGTAGTTGAACTTGTGCAGCTACGGGATACAGTTCGACCAGTTATATTAGCAGGAAAAAAAGAAACAGTAGCTTTGGCTATGCAAAGAGCTGAGAGATTTCGTGCTGAGCTCCTTGGACGTGGTGTTTTGTTAGTTCCTGTTATTTGGGGAGAAGGTCGGGAAACTAAAATTGAGAAAAAAGGATTTGGTCTACAGCCAAAGGCTGCTGAAGCTCTTCCATCTATTGGGGAAGATTTTGAGAAGCGAGCACAATCCATAACTGCAAAATCAAAGTTGAAGTCTGAAATTAGGTTCAAAGCTGAGGTTGTTTCACCAGCAGAATGGGAACGGTGGATAAGAGATCAGCAGAAATCTGAAGGAGTTTCACTTGGTGAAGACGTGTACATAATACTGCGCTTAGATGGACGAGTTCGAAGATCAGGGAAAGTAAGCTCCATTTCAGAGCAAACTTGTTTCGCTTTTCTTCCCACTGTTGTGGATTTGTCATATAATAGTTTGGCTCTAAAATCCATTCATTATATGGAGGATGCACTCTCAGTGTGGATTAGTGTGTTTGGAAATTCCTGTATACAGTTAAGGATTAAAGGGATGTTCGACTCTCCATTTGAAGCAAAGTTGAACAGTGATATTCAACTGCCTTGAAATGTGTAGAAACATTAAAATTAAAACAAACTCACACTAACTAGTGTACCTATAACTAAACCGACTCTGGGTTACACTTGTTAGATTTAGAAACAAGTGATTGCGTCTTTAATATTTAATATTTAATGGCAATTTCGTGGAACATTCGAGGTTTATGGTATTGATGGGATAAGCACGATTGTTTG 1640 0.414 MAVVAVQQFLCFSESNWRNITRPCVRLHTAILLRSRKRIQYSLISCSSSQTPEADTQTAESCVNLGLELFSKGRVKDALTQFETALSLNPNPVEAQAALYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALTAAAGISLFFTVPRLFYAINGGDGAPDLLATAGNAAINIAGIVVFVALFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVALAMQRAERFRAELLGRGVLLVPVIWGEGRETKIEKKGFGLQPKAAEALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPAEWERWIRDQQKSEGVSLGEDVYIILRLDGRVRRSGKVSSISEQTCFAFLPTVVDLSYNSLALKSIHYMEDALSVWISVFGNSCIQLRIKGMFDSPFEAKLNSDIQLP 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02674 484 SMART tpr_5 96 129 IPR019734 GO:0005515
Pste5g02674 484 SMART tpr_5 59 92 IPR019734 GO:0005515
Pste5g02674 484 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 46 152 - -
Pste5g02674 484 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Pste5g02674 484 Pfam Low psii accumulation1 / Rep27 167 244 IPR021883 -
Pste5g02674 484 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 45 413 - -
Pste5g02674 484 SUPERFAMILY TPR-like 53 125 IPR011990 GO:0005515
Pste5g02674 484 Pfam Tetratricopeptide repeat 59 91 IPR013105 -
Pste5g02674 484 Gene3D Tetratricopeptide repeat domain 46 144 IPR011990 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02674 5 18846598 18853707 Pste5g02674 5 18846598 18853707 ECH