Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02410 ATGGCTCCTCCTTACATTATCCTCTTTTTATTACTATCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCATACTGCATTCGGATTATCATCCGACACCATAACTCTCCCTCTCTCCCCCATCCTCACCAAACTGCCATACTCAGATCCATTCAAACTCGCCGCATCAGCATCACTAGCCCGGGCCCACCACCTGAAACACCACCGCAATTCCCCATCCGTAGCCACAACCGCAGTATACCCGAAAGGCTACGGAGGCTACTCCGTAGATCTCAGCTTCGGAACGCCGCCCCAAACCTCCCCCTTCATTCTGGACACGGGAAGCAGCCTCGTCTGGTTCCCCTGCACCTCCCGCTACGTCTGCTCCCACTGCCTCTTCCCCAACATCGACCCCACCAAAATCCGCACCTTCATTCCCAAAAACTCATCCACCGCCAAAATTGTCGGTTGCAGAAACCCCAAATGCGCCTACATCTTCGGCACCAAGGTTCAATCTCGCTGCTCCAAATGCAAACCCCAATCCCAAAACTGTTCCCTCACATGCCCCCCCTACATACTCCAATACGGTTTAGGCTCCACCGCAGGCTTCTTACTCCTCGACAATCTCAATTTCCCGCAAAATATCGTTCCCCAATTTCTCGTCGGCTGCTCCATTCTCTCCATCCGCCAACCCTCCGGAATCGCCGGCTTCGGACGCGGGAAAGAGTCTCTCCCTTCACAGATGGCTCTCAAGAGATTCTCCTACTGCTTAGTTTCCCACCGCTTCGACGACTTGCTTCAAACCAGCGACCTCATTCTGCAAATTACCTCCAACGGGGCCACCAAAACCAAGGGCCTCAGCTACACGCCATTTCGCCAAAACCCCTTCTCCAACAACTCCGCTTTCCAGGAATACTACTATGTTATCCTTCGCAAGCTCATTGTCGGAGGGGACTCTGTTCAGATTCCGTTCAAGTTTCTCCAGCCCGCTTCTGACGGTAGCGGCGGCACCATCGTCGACTCTGGATCCACCTTCACCTTCATGGAACGCCCCGTTTATAATTTGGTTGCCCAACACTTTCTCAAGCACATGAAGAATTATTCCCGGGCTCTCCACGTGGAGGCCCAAACCGGCCTCAGCCCCTGTTTCAATCTTTCCGGCGTCAAGACCGTCAATTTCCCCGAGTTCACTTTCCAGTTCAAAGGCGGCGCCAAAATGACGCTGCCCATTCAAAATTATTTCTCCTTGGTCGGCGATGCTGAGGTCGTCTGTTTGACCGTTATCTCCGACGGAGGTCTCGGTCCGGTCCAAACCTCCGGTCCTGCCATTATTTTGGGGAACTATCAGCAGCAGAATTTCTACATTGAATATGATTTGGAGAATGGGAGGTTCGGATTCGGCCCTCGGAATTGCAGAACCAAAGCCTAG 1404 0.5285 MAPPYIILFLLLSLLSLSLSLSHTAFGLSSDTITLPLSPILTKLPYSDPFKLAASASLARAHHLKHHRNSPSVATTAVYPKGYGGYSVDLSFGTPPQTSPFILDTGSSLVWFPCTSRYVCSHCLFPNIDPTKIRTFIPKNSSTAKIVGCRNPKCAYIFGTKVQSRCSKCKPQSQNCSLTCPPYILQYGLGSTAGFLLLDNLNFPQNIVPQFLVGCSILSIRQPSGIAGFGRGKESLPSQMALKRFSYCLVSHRFDDLLQTSDLILQITSNGATKTKGLSYTPFRQNPFSNNSAFQEYYYVILRKLIVGGDSVQIPFKFLQPASDGSGGTIVDSGSTFTFMERPVYNLVAQHFLKHMKNYSRALHVEAQTGLSPCFNLSGVKTVNFPEFTFQFKGGAKMTLPIQNYFSLVGDAEVVCLTVISDGGLGPVQTSGPAIILGNYQQQNFYIEYDLENGRFGFGPRNCRTKA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02410 467 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
Pste5g02410 467 SUPERFAMILY Acid proteases 81 463 IPR021109 -
Pste5g02410 467 Gene3D Acid Proteases 69 256 IPR021109 -
Pste5g02410 467 FunFam Aspartyl protease family protein 269 466 - -
Pste5g02410 467 Pfam Xylanase inhibitor C-terminal 298 459 IPR032799 -
Pste5g02410 467 PANTHER OS07G0603500 PROTEIN-RELATED 53 463 - -
Pste5g02410 467 ProSiteProfiles Peptidase family A1 domain profile. 86 459 IPR033121 -
Pste5g02410 467 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
Pste5g02410 467 PRINTS Pepsin (A1) aspartic protease family signature 435 450 IPR001461 GO:0004190|GO:0006508
Pste5g02410 467 PRINTS Pepsin (A1) aspartic protease family signature 329 340 IPR001461 GO:0004190|GO:0006508
Pste5g02410 467 FunFam Aspartic proteinase nepenthesin-2 61 263 - -
Pste5g02410 467 Gene3D Acid Proteases 265 467 IPR021109 -
Pste5g02410 467 Coils Coil 467 467 - -
Pste5g02410 467 Pfam Xylanase inhibitor N-terminal 86 251 IPR032861 -
Pste5g02410 467 CDD pepsin_A_like_plant 85 463 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02410 Pste-Chr5 16684124 16685527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02410 78 464 Miscellaneous Gene Families AT1G44130 25.420 8.31e-13 68.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02410 5 16684124 16685527 Pste5g02410 5 16684124 16685527 ECH