Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste5g02328 | GAAGATGGAAGATGGAAGATAGAAGGAAGAAAGGGTGTGAAGAGGAGATAGGAGATGGAGGCAGTAGCAGGCTCCCGCCATTTCTCAACTCTCTCCCTTTCTGTGTCTAACAATGGAAGTGGAGCCTTTCACTCTTGTTCTGCTAAAACAGTGAAGCTTTCTTCTCCTTGGATCAACGCTTCCTTATCCTCCAGAAACTGGTTCGCGAAAGAGGTATGGGGTTGGGTGCACTCCAAGGGCGTCGCCGTCAGAAGGGACACGCCGGGACCGCTGGTGAGGGCGGAAATGTTCGGCCAATTGACTAGTGGCCTTGAGACTGCGTGGAACAAGCTCAAAGGAGAAGAGCTTTTGTCTAAAGACAACATTGTGGAGCCTATGCGCGATATTAGGAGAGCTCTTCTTGAGGCTGATGTTAGTCTTCCTGTTGTCAGAAGGTTTGTGCAATCTGTCAGTGATCAGGCTGTGGGTGTTGGTGTCATTCGAGGAGTCAGACCCGATCAGCAATTGGTTAAGATTGTACATGATGAACTTGTACAATTGATGGGTGGAGAGGTTTCTGAACTTGTTTTTGCCAAATCTGGGCCCACTATCATTTTATTGGCTGGACTCCAGGGAGTTGGCAAGACCACTGTCTGTGCAAAGTTGGCAAATTATCTCAAGAAACAGGGGAAAAGTTGCATGCTAGTTGCTGGGGATGTTTACAGACCTGCTGCTATTGACCAGCTAGCTATTTTGGGAAAACAGGTGGATGTGCCTGTCTATACAGCAGGTACTGATGTTAAACCTTCAGAAATTGCCAAACAAGGTTTAGAAGAGGCAAAAAAGAAGAAAATTGATGTTGTTATCGTTGATACTGCCGGTAGGCTGCAGATTGACAAGGCAATGATGGATGAGTTAAAAGAAGTGAAAAAGGCATTGAATCCAACAGAAGTTTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCTGCAGCATTGGTAACCACTTTCAATCTTGAGATTGGAATAACTGGTGCCATCTTGACGAAGTTAGATGGAGATTCAAGAGGTGGAGCTGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATAAAACTAGTAGGACGGGGGGAACGCATGGAGGATCTTGAACCTTTCTACCCTGATCGGATGGCAGGGCGCATACTAGGAATGGGAGATGTTCTTTCTTTCGTAGAGAAAGCACAAGAAGTTATGCGTCAAGAAGATGCTGAAGAACTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTCAATGATTTTCTAAAGCAAACTCGTACTGTTGCAAAAATGGGTTCTGTGTCTCGTGTCATTGGAATGATTCCTGGTATGGGGAAGGTTACTCCTGCTCAAATTCGAGATGCAGAGAAGAATTTGCAGAACATGGAAGCAATGATAGACGCAATGACCCCTGAGGAGAGGGAAAAACCGGAACTGTTGGCAGAATCCCCAGTCAGGAGGAAAAGAGTTGCTCTGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAACTTTTCCAAATGCGTGTTCGTATGAAGAACCTGATGGGTGTAATGGAAAGTGGATCACTTCCAACGCTCAGTAATCTTGAGGAAGCGCTTAAAGCAGAAGAAAAGGCTCCACCCGGCACTGCAAGGAGAAGGAAGAGATCGGAATCAAGGAGTGTATTTGTGGACTCAGCACCATCAAGGCCAACTCCTCGTGGTTTTGGGAGCAAAAACTGAATCTCTAAAGCGTTTAACACTAAACATTATAATGCAAAGTTTGGATTGATGGGTCGCTCATGATCAACTTGTTTTATTAGCTTTATTCACCAAAAATAATTATGTATCATCATTAGAGCAATTCATATAGCTGCAGCTTGTTTGATTCAACTTTCTTCGGCTAAAATAATTATTTACCATCATTAGATCAATTCATATTGCAATTAAGGTTGTCCAGGAGGTCGATGTAATTTAGGCAGAGAAGAGTTGTACGATACATATGCGGGATATGGAAATCTAAGAAATATGGGTGTCACTCTTGTACAATCTCATCTTTGTATTGTATCTTGATGTGGGAGTGGAATATTACTCAGACCGTCAAATATTTTTTTATTGACAAATAATTTTGTGAGGGTTACTTATGCTTAGTTCTGACTTTTGAAAAATGCAAGGATAGCAAGAGGCAAAATGCATGTAATTATGTAAAAGATGGTTCTAAGAATCTAAATGTGAAGATGCCACCGTCTATGATCTGGCTATCTACACTCTTCAACAGAATATTGCTGAACAAAGGTACGTGTAAAATTTCTTTTATTCACAAGCTTCCGTGCGGTGAACCTTATGTGCGGGGATAGATTGTTGAAGTTAGATTCATTTATTTAAATTTAAATATTCAATTTGATTTGGTTAAAATTTTTAAGGATTGAACTTTCATTGGCTA | 2452 | 0.4217 | MEAVAGSRHFSTLSLSVSNNGSGAFHSCSAKTVKLSSPWINASLSSRNWFAKEVWGWVHSKGVAVRRDTPGPLVRAEMFGQLTSGLETAWNKLKGEELLSKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVRPDQQLVKIVHDELVQLMGGEVSELVFAKSGPTIILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLAILGKQVDVPVYTAGTDVKPSEIAKQGLEEAKKKKIDVVIVDTAGRLQIDKAMMDELKEVKKALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEELQKKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKVTPAQIRDAEKNLQNMEAMIDAMTPEEREKPELLAESPVRRKRVALDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMESGSLPTLSNLEEALKAEEKAPPGTARRRKRSESRSVFVDSAPSRPTPRGFGSKN | 565 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste5g02328 | 565 | Hamap | Signal recognition particle 54 kDa protein [srp54]. | 82 | 522 | IPR022941 | GO:0003924|GO:0005525|GO:0006614|GO:0048500 | |
| Pste5g02328 | 565 | ProSitePatterns | SRP54-type proteins GTP-binding domain signature. | 345 | 358 | IPR000897 | GO:0005525|GO:0006614 | |
| Pste5g02328 | 565 | MobiDBLite | consensus disorder prediction | 526 | 546 | - | - | |
| Pste5g02328 | 565 | CDD | SRP_G | 178 | 370 | - | - | |
| Pste5g02328 | 565 | SMART | SRP54_3 | 177 | 372 | IPR000897 | GO:0005525|GO:0006614 | |
| Pste5g02328 | 565 | SMART | AAA_5 | 176 | 323 | IPR003593 | GO:0016887 | |
| Pste5g02328 | 565 | MobiDBLite | consensus disorder prediction | 460 | 482 | - | - | |
| Pste5g02328 | 565 | Pfam | SRP54-type protein, helical bundle domain | 82 | 159 | IPR013822 | GO:0005525|GO:0006614 | |
| Pste5g02328 | 565 | Pfam | Signal peptide binding domain | 403 | 501 | IPR004125 | GO:0006614|GO:0008312|GO:0048500 | |
| Pste5g02328 | 565 | FunFam | Signal recognition particle 54 kDa subunit | 168 | 361 | - | - | |
| Pste5g02328 | 565 | Gene3D | - | 81 | 382 | IPR042101 | - | |
| Pste5g02328 | 565 | PANTHER | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 | 78 | 512 | IPR022941 | GO:0003924|GO:0005525|GO:0006614|GO:0048500 | |
| Pste5g02328 | 565 | SMART | SRP54_N_2 | 78 | 163 | IPR013822 | GO:0005525|GO:0006614 | |
| Pste5g02328 | 565 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 119 | 430 | IPR027417 | - | |
| Pste5g02328 | 565 | Gene3D | - | 383 | 507 | IPR036891 | GO:0006614|GO:0008312|GO:0048500 | |
| Pste5g02328 | 565 | Pfam | SRP54-type protein, GTPase domain | 177 | 372 | IPR000897 | GO:0005525|GO:0006614 | |
| Pste5g02328 | 565 | Gene3D | - | 167 | 361 | IPR027417 | - | |
| Pste5g02328 | 565 | NCBIfam | signal recognition particle protein | 80 | 504 | IPR004780 | GO:0003924|GO:0005525|GO:0006614|GO:0048500 | |
| Pste5g02328 | 565 | MobiDBLite | consensus disorder prediction | 460 | 485 | - | - | |
| Pste5g02328 | 565 | MobiDBLite | consensus disorder prediction | 526 | 565 | - | - | |
| Pste5g02328 | 565 | SUPERFAMILY | Signal peptide-binding domain | 403 | 504 | IPR036891 | GO:0006614|GO:0008312|GO:0048500 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste5g02328 | Pste-Chr5 | 15777622 | 15785022 | Dispersed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pste5g02328 | 5 | 15777622 | 15785022 | Pste5g02328 | 5 | 15777622 | 15785022 | ECH |