Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01886 ATGAATGCACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCGCTAGGCTTCTGGGTTTGGATTCGAAACTTGAGAAAAGTTTACTAATTCCATTCAGGGAAATCAAGGTTGAATGTACTATACCTAAAGATGATGGCACGCTGCAATCTTATGTTGGGTTTAGAGTTCAACATGATAATGCCAGAGGCCCGATGAAAGGAGGAATCAGATATCATCCTGAGGTTGACCCTGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAGGGAGGGATAGGGTGTAACCCATCAGAATTAAGCAAGTCTGAGTTAGAAAGGCTTACCAGAGTTTTTACCCAGAAAATTCATGATCTGATTGGAACTCACACAGATGTGCCAGCACCTGATATGGGAACAGGACCACAGACCATGGCATGGATACTAGATGAATATTCCAAATTTCACGGTTACTCTCCTGCGGTAGTGACTGGAAAACCTATAGATCTTGGTGGATCTCTAGGTAGAGACGCAGCAACTGGAAGAGGAGTCCTCTTTGCCACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGGGTTTTGGAAACGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGGAAAGTTATAGCTGTGAGTGACATAACAGGAGCCATAAAGAACAGCAATGGTCTTGACATCCCAAGCCTACTTGAGCATTCCAAAGTGCACCAGGGAGTAAAAGGATTCCATGGTGGTGATCTAATTGACCCTAACTCAATATTGGTTGAGGATTGTGACGTTCTAATCCCAGCAGCTCTTGGGGGTGTCATCAATAGGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCGGCTAATCACCCAACTGACCCAGAGGCTGATGAGATTCTAAAGAAGAAAGGGGTTGTGATCCTTCCTGACATATATGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAGACCTACATGACCAAAGGATTCAAAGATGTGAAGGAGATGTGCAAAAGTCACGAATGTGATCTTCGTATGGGAGCCTTCACCCTAGCAGTTAACCGTGTCGCACGTGCCACTGTCCTTAGGGGTTGGGAAGCTTGACATCTATTTTTTCTGCTTTCAATAAAAGAGCTCCACTCTCAGCATTCAGCAACACCACAAAGTTTTTGTTGCTTTCATGTGTTGGTGAATCCTATTTTCACCCCAAAATTTTCTTTTATCCATTTTATATCTGTTTTTCCAAAGGGAAGGACTCCATCTACCATTCTTGGATTTATATCCCAATTCCTGTTTATGCACTAAATACCAAAAAATAATGTTTGTGCAGATTTTTAAAATGCCACATGATTCAATCTTACATATTTT 1500 0.422 MNALAATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLQSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPSELSKSELERLTRVFTQKIHDLIGTHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEYGKSVSGQRFVIQGFGNVGSWAAQLISEKGGKVIAVSDITGAIKNSNGLDIPSLLEHSKVHQGVKGFHGGDLIDPNSILVEDCDVLIPAALGGVINRENANEIKAKFIVEAANHPTDPEADEILKKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKSHECDLRMGAFTLAVNRVARATVLRGWEA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01886 411 PIRSF Glu_DH 1 411 IPR014362 GO:0016639
Pste5g01886 411 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 176 408 IPR006096 GO:0006520|GO:0016491
Pste5g01886 411 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 33 159 IPR006097 GO:0006520|GO:0016491
Pste5g01886 411 Gene3D Leucine Dehydrogenase, chain A, domain 1 33 175 - -
Pste5g01886 411 PANTHER GLUTAMATE DEHYDROGENASE 2 409 - -
Pste5g01886 411 FunFam Glutamate dehydrogenase 33 175 - -
Pste5g01886 411 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 409 IPR036291 -
Pste5g01886 411 FunFam Glutamate dehydrogenase 176 410 - -
Pste5g01886 411 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 5 178 IPR046346 -
Pste5g01886 411 Gene3D - 176 410 - -
Pste5g01886 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 167 189 IPR006095 GO:0006520|GO:0016491
Pste5g01886 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 88 102 IPR006095 GO:0006520|GO:0016491
Pste5g01886 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 336 347 IPR006095 GO:0006520|GO:0016491
Pste5g01886 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 209 229 IPR006095 GO:0006520|GO:0016491
Pste5g01886 411 CDD NAD_bind_1_Glu_DH 176 402 IPR033922 GO:0016639
Pste5g01886 411 SMART ELFV_dehydrog_3 178 408 IPR006096 GO:0006520|GO:0016491
Pste5g01886 411 ProSitePatterns Glu / Leu / Phe / Val dehydrogenases active site. 96 109 IPR033524 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01886 Pste-Chr5 11917930 11921563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01886 1 296 EF-hand Containing Proteins AT5G07440 79.730 3.89e-180 502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01886 5 11917930 11921563 Pste5g01886 5 11917930 11921563 ECH