Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01885 AGAGAGTCCATTTAATGTGTTGACGGGCCAATGGACAGGGCCTGGAAGTTGTTCTCTAAACACGGGCTGGCGTGAACGGAGATGCCGATGGCACGCACAACAAAGCAGGGACAGTGGAAGATTGCACAACAAAACACAGCACATTGAATGAACGGTATCGTGCTTTGTTGTAGTTGTAGACTATAGAGACTAGCACGCTTCCAGGAATTGCCTTGCTTGCCGCATTGGTGGCATCCAATCCAACCTGAATCGAAAGTGCAAAACTGATAGCATGAGATAAGAACAAGAAGTAGTAGTAACTAATTGGCAAGCTGCAATCGTGGCCGTCCATTCCGTTGACCGATGAGCATAAAAAACACAGGATTCGCACTTGCCATCGCCAGCGCATACATCAAATCCAACAGCCGCAAACCCTTCCCTTCTTCTTCTCCTCGTTGATCCGCGCTGGCACAGAAGCCATTGCTAGACCCTCCCAACCCTAGCACAGCGACGCACTCAATTGCGATGCGATGATCCTGCGCACGTGAGGCGCCACCGCACCATGATGAACACAACCAACGGCATCATGTCGCCGTCGTCTTCCTCGGCAACGGTTCAGTCGCCGGGACTCAAGACCTATTTCAAAACCCCCGAAGGAAGATATAAACTTCAATACGAGAAGACTCATCCTTCTGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGGTAACCCTGGCGCATCTCAAGGACAAGCCTGCGCCCTCTACCCCAACTGCTTCGTCTTCAAGTTTCAGTGCCAGCAGTGGGGTACGCTCGGCGGCAGCTAGATTGTTGGGAGGAAGCAATGGGAGCCGGGCACTTAGTTTTGTTGGAGGCAACGGTGGCAGCAAGAGTAATGGAGGAAATACCAGGATTGGCTCCATTGGTGCTTCCAGTACAAGCAGCTCAATGTCGAATCCCAATTTTGATGGGAAAGGAACGTACTTGATATTCAATGTCGGGGATGCAATTTTCGTTAGTGATTTGAATTCTCAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCATGCGTTTGATCAGGATGCCAAGGATGGACATGATTTGCTCATTGGTTTGAACTCTGGCGATGTCTACTCAGTATCACTGAGGCAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCACCATCATAACAAAGATGTCGTTGTACTTGTATTGCTTGGGTGCCGGGAGGTGATGGTTCTTTTGTTGTTTCTCATGCTGATGGGAATTTGTACGTATACGAAAAGGCAAAACAAAGATGGTGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGACCAAACTCAATTTTCAGTTTCCCATGCACGTTACAGTAAGAGTAATCCTATAGCCAGATGGCATATATGCCAGGGTTCAATTAATAGTATTTCTTTCTCAATGGATGGGGCATACTTAGCAACTGTTGGACGAGATGGCTATTTGCGAGTGTTCGATTACTCAAAAGAACAACTTATATGTGGAGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTTCTTGGAGCATGGATGGAAAATACATTTTGACGGGAGGGGAAGACGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAACTCATGGGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCACCAAATTCAAATGACAATGGAGAGACTTTCACGTATCGTTTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTATGGAACCTGGAAATGGACGAGATTGTAGTGCCCTTGAGGCGGCCACCCGGTGGATCTCCGACTTACAGTACTGGAAGCCAATCATCCCATTGGGACAATGTTGTTCCATTGGGTACCTTGCAACCTGCTCCAAGTATGCGGGATGTTCCAAAAATCTCTCCATTGGTTGCTCACCGTGTGCATACTGAACCACTCTCTGGTTTGATATTTACCCAGGAATCTGTGCTTACTGCCTGCAGGGAGGGGCACATTAAAATCTGGATGAGGCCTGGGGTTGCTGCAGAGAACCAATCAAGCAACTCTGAAAACTTGTTAGCTACCAGTCTCAAGGAGAAGCCTTCACTTTCAAGCAAGATCGGCAATTCTAGCTACAAACAATGACTAAATCTTAATCTAAAGGGAATTTTAAGCAATTTTTTTATATGGTTTGTTTATCTTTTATCCAGTTGGTTTCCTAGTTTTAACATAGTGATTAAAGTAAGAAAGATGAACCAAACTGGTCTATTGTATATTCAGTTATTGACGGATGAGCATGCCATTGATGGCACTGAGAGGATGGGAGAGACAGTTCTCTCCGGCTGCCTGCTGTAATTATAAAACGGCTGTTATTAGGATATCTGATTAGTGATTACAGGAATAATGTGAAAATTGGTCCTTCGAGATCGGTACTTTTGAAGTGCATACATACAAGCCATTAGTTATTGTGTTG 2501 0.4554 MMNTTNGIMSPSSSSATVQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGNTRIGSIGASSTSSSMSNPNFDGKGTYLIFNVGDAIFVSDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHHNKDVVVLVLLGCREVMVLLLFLMLMGICTYTKRQNKDGAGDSSFPVVKDQTQFSVSHARYSKSNPIARWHICQGSINSISFSMDGAYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCSWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETFTYRFGSVGQDTQLLLWNLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKIWMRPGVAAENQSSNSENLLATSLKEKPSLSSKIGNSSYKQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01885 543 MobiDBLite consensus disorder prediction 107 133 - -
Pste5g01885 543 Pfam WD domain, G-beta repeat 294 322 IPR001680 GO:0005515
Pste5g01885 543 Pfam WD domain, G-beta repeat 339 364 IPR001680 GO:0005515
Pste5g01885 543 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 373 IPR001680 GO:0005515
Pste5g01885 543 SMART WD40_4 468 505 IPR001680 GO:0005515
Pste5g01885 543 SMART WD40_4 283 322 IPR001680 GO:0005515
Pste5g01885 543 SMART WD40_4 325 364 IPR001680 GO:0005515
Pste5g01885 543 SMART WD40_4 367 419 IPR001680 GO:0005515
Pste5g01885 543 SUPERFAMILY WD40 repeat-like 133 504 IPR036322 GO:0005515
Pste5g01885 543 PANTHER WD REPEAT PROTEIN 12 522 - -
Pste5g01885 543 Gene3D - 13 513 IPR015943 GO:0005515
Pste5g01885 543 MobiDBLite consensus disorder prediction 514 543 - -
Pste5g01885 543 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01885 Pste-Chr5 11916185 11922613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01885 299 426 Miscellaneous Gene Families AT5G08390 24.219 1.14e-06 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01885 5 11916185 11922613 Pste5g01885 5 11916185 11922613 ECH