Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01878 CACGAAAGCAAAAAAGAGAAAGAAGAAAAGGCGAACCCAACAAAAATCTGGTGTGAACCAGTGACCACCACAGCCTCTCTCACTCTCACTTACATATTAATCTAAAATGGCTTTATACTGTGATTTGTGAAGGACTTAAAACAATGCAATCGCACTTTCTGGTGGGCGCCATCGCCGTCGGACGCTATGGCGGCGCCGCCGCATCCTCCTCCTGGACCAACCCTCCTCGCCGCCGCCGCTCCCCCCTCGTCGTCGCTTCCTCCTCGCCCGCTGCCGTCAACGGCGGCCAGAACCACTACGCCGTGCTCGGCGTCGCCCGCACTGCCACCGCCCTCGAGATCAAACGCGCTTATCGCCTCCTCGCCCGCAAGTTTCATCCTGATGTTAGCAAGGATCCACATGCAGCTGAATTATTCAAGAGCATCCATCATGCATATGAAGTACTATCTAATGAAGTAACGAGAGTTCAGTATGATCAAGAACTTCAATTTGGTCACAACTCTTCCAGGGAAAAATGGAGTTACAGCACTGAATTTGAAGAACAGGCAAGAGTCTATAGGTGGGCCCACCTGAGGAGAAAAATGAATAATCAAAGATACTGGGAGAATTACAATGTGAATGAGGAGGACAACTACACCAGTGAAACAGAAGAGGAGGAAGATAAAGAAATTTTAGATGAAGAGAGGGGTTCTTTTATTGAAGTGCTTAGATCAGCATTCATCTCATTATTTTTGTTTCAGACGTTTGGATCCCGACTCTCACTCTCATTTAGCAGTCTGTCGGCTTTGTTTGATAAGCAGTTAGACACGGGCTATAAAATTGCGTATGTAATAGCATGGATTTTGGGTGGGAGGGGTGGCGTATTGCTAACATTATGCTTGTCATTTGCAAGTTGGGTTTGCGGCAAAACCAGTAGTAGTGTTGTTGCACTAATTGTGGTGGCCATGTGGGTTGGCTCCTACCTTGCAAGGTATGCACCACTTCCCCAAGGTGCTCTATTGGCGCTTCTCTACATGTCCATTAAGCTACAGTCTGACCTAACATAAAGAAATTCCTGCACTGCAGCGAGTATTTCTTCATAATCTGCAGATCTGACTATATTCTTTATTATGGTGTTTGTACATTATAATATACTCTAGTAAACTAGTAAATGTAAATATATGTTATGTTATTTGTTGATTATAAATAAAGTGCATAAACGGTTGATGAGTTGGCATAGAAGGAAGAAAAAGTCTCGAGAATTTGACACTAGACTTTGGAAAATGAAAACTGAAATTAGTTTGTAAAATCATT 1293 0.4393 MQSHFLVGAIAVGRYGGAAASSSWTNPPRRRRSPLVVASSSPAAVNGGQNHYAVLGVARTATALEIKRAYRLLARKFHPDVSKDPHAAELFKSIHHAYEVLSNEVTRVQYDQELQFGHNSSREKWSYSTEFEEQARVYRWAHLRRKMNNQRYWENYNVNEEDNYTSETEEEEDKEILDEERGSFIEVLRSAFISLFLFQTFGSRLSLSFSSLSALFDKQLDTGYKIAYVIAWILGGRGGVLLTLCLSFASWVCGKTSSSVVALIVVAMWVGSYLARYAPLPQGALLALLYMSIKLQSDLT 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01878 300 ProSiteProfiles dnaJ domain profile. 50 114 IPR001623 -
Pste5g01878 300 ProSitePatterns Nt-dnaJ domain signature. 91 110 IPR018253 -
Pste5g01878 300 Pfam DnaJ domain 50 111 IPR001623 -
Pste5g01878 300 Gene3D DnaJ domain 48 192 IPR036869 -
Pste5g01878 300 SUPERFAMILY Chaperone J-domain 49 119 IPR036869 -
Pste5g01878 300 PRINTS DnaJ domain signature 86 106 IPR001623 -
Pste5g01878 300 PRINTS DnaJ domain signature 52 70 IPR001623 -
Pste5g01878 300 PRINTS DnaJ domain signature 70 85 IPR001623 -
Pste5g01878 300 FunFam Uncharacterized protein 47 195 - -
Pste5g01878 300 CDD DnaJ 50 103 IPR001623 -
Pste5g01878 300 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 28 291 - -
Pste5g01878 300 SMART dnaj_3 49 106 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01878 Pste-Chr5 11883190 11887841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01878 3 115 Miscellaneous Gene Families AT5G49580 33.621 5.50e-08 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01878 5 11883190 11887841 Pste5g01878 5 11883190 11887841 ECH