Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01827 ATGGAAGTAGCTGTTTCCCCTCAAGTAAAGCTGAATCTGCAGACAACAGGTCGCAAAATTTCTTCTGCTGGAACTCAGAAGGATCTGTGGCTTGTTGTGCGAGAAGGATCTCTAAGTGATGTAGAGTTGGCTTTGGCATCATTGAAGAAGAGTGGGAGCAATATCAATATGAGGAACACCTTTGGGCTGACTCCTCTTCATATTGCTACTTGGAGAAACCACATTCCCATTGTGAGAAGGCTTCTTGCTGCTGGTGCTGATCCTGATGCCCGAGATGGAGAATCCGGATGGAGTAGCCTGCACAGGGCTCTGCATTTTGGTCATCTTGCTGCAGCAAGCATCCTTCTTCAGCATGGTGCCTCTATTACATTGGAGGACTCTAAATCTCGAATACCTGTAGATCTCTTATCTGGCTCTGTATTTCAGGTTATTGGAAATGAACACAGTTCAGTGGCTACTGAGGTCTTTAGTTGGGGCAGTGGTACAAATTATCAGCTTGGAACTGGAAATGCACATATTCAGAAGTTACCATGCAAAGTTGATTCACTGGCTGGTTCTTTTATAAAGTTAATTTCTGCTGGGAAATTCCATAGTGTGGCACTTACTGATCGTGGAGACGTGTATACTTGGGGATTTGGAAGGGGTGGTCGTCTAGGGCACCCTGATTTTGATATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGACATCTGGTCTGGGTTCTCGCAGAGTGATGACAATTGCTGCTGCTAAGCATCATACGGTTATTGCTACCCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTTGGATACCCTTCTGTTGATACACAACCCACACCTCGTAGAGTATCTTCTTTGAGGTCAAAAGTTGTTGCTGTTGCTGCAGCAAACAAACACACAGCTGTAGTCTCTGATATAGGTGAAGTTTTTACTTGGGGTTGCAACAGGGAGGGGCAGCTTGGTTATGGCACCTCAAACTCAGCATCTAATTACACCCCACATGTAGTTGAATCCTTGAAGGGAAAGATTTTGACCAGAGTTTCTGCTGCAAAATATCACACAATTGTATTAGGATCTGATGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACTCCAAAACGTGTAGTAGTTAGTAGAAACTTAAAGAAAAGTGGAAACACTCCTTTAAAATTTCATCGCCAGAAACGGCTTAATGTGGTTTCTATAGCAGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCGTTATTTTATTGGGTATCCTCAGATCCTGATCTTAGATGCCAACAGTTATATGCTATGTGTGGAAGGAATATGGTGAGCATATCAGCTGGAAAGTATTGGACTGCCGCAGTTACTGCTACAGGTGATGTTTATATGTGGGATGGGAAGAAAGGTAAGGATAAACCCCTTGTTGCAACTCGGTTGCCTGGTGTAAAGAAGGCTACATCAGTTTCAGTTGGTGAAACACATTTGCTAATTGTGGCTTCGCTGTACCATCCTGTCTACCCTCCCAACATGATTGAAAATTCTCAGAAACTCAAGTTGAATAACAAGGATGATATGGAAGAGTTAAATGAAGACATTTTATTTGAAGATATGGATTCCAGTAACGTGATATCTAGTGTACAAAATGATACAGTCAGGCAGAGATCTATTCCCAGCTTAAAAAGCCTTTGTGAAAAAGTAGCAGCACAAAGCCTAGTGGAGCCACGGAATGCTGTACAACTTCTTGAGATTGCTGATTCCCTTGGAGCAGATGATTTGAAGAAGTATTGTGAGGAGATTGTTATGCGCAACCTGGATTATATCTTTGCAGTTTCATCACATACTGTTGCAAGTGCCTCACCAGATATTCTGGCTAATCTTGAGAGGTTGTTAGACCAGAGGTCATCTGAGCCATGGAGTCACCGTAGGCTCCCTACTCCAACTGCTACTTTCCCTGCAATCATTAACAGTGAAGAGGATGATAGTGAGATAGAGTTTCAGAGGACTCGTGATGAACCCATGAAAATGTCTGCAATGAAATTGGAGAAAGTCCAAAGACTAGACTCCTTTCTACAGCCCAAGGATGACCCTAATAAAGAAATCTCCAAAGTAGTCCGAGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTGGAAGATAAGCAGTCTAATGGACATCTTCTTGATGACCAGCAGATTGCAAAGCTTCAATCTAAGCCAACCCTTGAGAGCTCACTTGCAGAACTAGGTGTTCCTGTTGAGACATCACAGAATAAAGAGTCATCTTCTATGTTACCAGAAGGGAAAGGTAGTAGGAAGGGTAAACTATCCAAAAAGCAGAGGAGAAAGAGTGGCAAATCAAACACAGAGCAGACAGAAATAGAACCTGTTTACTCTAAAAGTGAAGCCATTCCCAAATCTGAGGATCTGTTGGATATTGACATCATGGGGGTTCCTAATTCAAAGTATGGAGAAGTAACTGTGTACAGACAAAATATGCAGTCTGAAGCACTTTTAATTCATAGATTGCCTTTATGGGTTGCTTATAAAGTTCCTGGTTTGGGTAGTTCAATGAGGTTTGAGCCTATTTTCAGAATAGGTCATGAAGAAGTGGAAGAAGATGCTGTATGTGAACAGATCACAGCAGATCAGGGAGCAAAGGAATTTGCTTTTGTAGTGCAGAAGAAAGATGCTTTAGAGTTGCTGAAAGCCAAGGTTCAGGCACCAAGGACTTCAAAGAAGAAGAGTAAGAAGGGTGGGCTTTCTATGTTTCTGAGTGGTGCTCTCGATGAAGCCCCGAAAGAGGTGGTGGTTCCTCTTCCACCAACACCAAAATATGATGGTCCTGCATGGGGTGGGGCCAAGTTCATGAAGGGTTCTGCTTCTCTACGTGAAATCCAGGATGAACAAAGCAAAATAAAGGTAAGCAAACCGGCTGGGAGCAAAGATAAGGTGGAAGATCTTTCTGATTTTGGCACTGGGGGCAAAATAAAGTTGAGTTCATTTCTCCCTTCAAGCCCAATACCTGTTACCTCAACTTGTAGTTCCCAGGTATCTGATGGAGAAATAAGCACCCCTCCTTGGGCTGCTTCAGGAACCCCTCCCCAACCTTCTCGGCCATCGCTTAGGGACATCCAAATACAACAGGGAAAGAAACATCAGAGCCTTTCACATAGTCCAAAGACTAGAACAGCTGGATTTTCCATCCCTACTGGTCAAGGCTCGCCCTCCGAAACAACTGGAGTGAGTCGCTGGTTCAAGCCTGAGGTGGAAACACCATCCTCAATTCGTTCTATTCAAATTGAGGAAAAGGCTATGAAAGATCTCAAGCGTTTCTATAGCAGTGTCAAGATTGTCAGGAAGCAATCTTGATGCCATCTTTACAATGTATCTAATAAAAGGAGCAAGAGGGGCTCTTGTTCTCCTCCACCTTGAGCATTACCATTTTTTCTTATCCTTAATCGCTTTCCTTGTTAGTACAATGACTAAATTAATCTGTACAGATAGTTGCAGTGTACATCCTTGTTTCTTTAAAAGTCAAAACTGTAGTTTTAGTTTCTTAGCATCTGGGTCTTCTACATTTTCTGTTACCAACTAGCACTGTATATGACCCAAGATGTTTTTATGTACTCATTTTTAACCGTCTCAACTCAGAGACTGGTCAATAATGATCCTGAACCTGTTGTCAAGGGCAGGCATGGTTACAGATTTCCCTGACTCAAGTTGTATCAAGGCTCAACAATGTCAGAATAAGAGGGCACGTCTTTCCAAATAAGGGCGTTGTATGGTCCCATACTTAGGGATATTGCATCAATCTTCAACCCCTAAACTCACCCCCAATATTATTATTATTATATATATCAACCTTGAGTTGTGACCCTTCTCTACTGCCCTAATGTTGTTCCATTTAGTCAAGGAATATTTGGACTTTGGATTCATAAGAATTGTTCAATTTGCTTTTTATTAGCTTTCTGTATGCCAGCAACTTAGGAGACTCTATAACCATATTTAGC 4034 0.4271 MEVAVSPQVKLNLQTTGRKISSAGTQKDLWLVVREGSLSDVELALASLKKSGSNINMRNTFGLTPLHIATWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAAASILLQHGASITLEDSKSRIPVDLLSGSVFQVIGNEHSSVATEVFSWGSGTNYQLGTGNAHIQKLPCKVDSLAGSFIKLISAGKFHSVALTDRGDVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMTIAAAKHHTVIATQGGEVFTWGSNREGQLGYPSVDTQPTPRRVSSLRSKVVAVAAANKHTAVVSDIGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKILTRVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVVSRNLKKSGNTPLKFHRQKRLNVVSIAAGMVHSMALTDDGALFYWVSSDPDLRCQQLYAMCGRNMVSISAGKYWTAAVTATGDVYMWDGKKGKDKPLVATRLPGVKKATSVSVGETHLLIVASLYHPVYPPNMIENSQKLKLNNKDDMEELNEDILFEDMDSSNVISSVQNDTVRQRSIPSLKSLCEKVAAQSLVEPRNAVQLLEIADSLGADDLKKYCEEIVMRNLDYIFAVSSHTVASASPDILANLERLLDQRSSEPWSHRRLPTPTATFPAIINSEEDDSEIEFQRTRDEPMKMSAMKLEKVQRLDSFLQPKDDPNKEISKVVRAIRKKLQQIEMLEDKQSNGHLLDDQQIAKLQSKPTLESSLAELGVPVETSQNKESSSMLPEGKGSRKGKLSKKQRRKSGKSNTEQTEIEPVYSKSEAIPKSEDLLDIDIMGVPNSKYGEVTVYRQNMQSEALLIHRLPLWVAYKVPGLGSSMRFEPIFRIGHEEVEEDAVCEQITADQGAKEFAFVVQKKDALELLKAKVQAPRTSKKKSKKGGLSMFLSGALDEAPKEVVVPLPPTPKYDGPAWGGAKFMKGSASLREIQDEQSKIKVSKPAGSKDKVEDLSDFGTGGKIKLSSFLPSSPIPVTSTCSSQVSDGEISTPPWAASGTPPQPSRPSLRDIQIQQGKKHQSLSHSPKTRTAGFSIPTGQGSPSETTGVSRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQS 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01827 1130 MobiDBLite consensus disorder prediction 756 806 - -
Pste5g01827 1130 Coils Coil 519 539 - -
Pste5g01827 1130 MobiDBLite consensus disorder prediction 1011 1033 - -
Pste5g01827 1130 ProSiteProfiles Ankyrin repeat region circular profile. 61 92 - -
Pste5g01827 1130 SUPERFAMILY Ankyrin repeat 32 135 IPR036770 -
Pste5g01827 1130 Gene3D - 387 509 IPR009091 -
Pste5g01827 1130 Gene3D - 144 386 IPR009091 -
Pste5g01827 1130 Coils Coil 708 728 - -
Pste5g01827 1130 Gene3D Potassium Channel Kv1.1; Chain A 531 618 IPR011333 -
Pste5g01827 1130 Gene3D - 22 143 IPR036770 -
Pste5g01827 1130 MobiDBLite consensus disorder prediction 1042 1089 - -
Pste5g01827 1130 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 424 IPR000408 -
Pste5g01827 1130 PANTHER BTK-BINDING PROTEIN-RELATED 8 1121 - -
Pste5g01827 1130 SMART ANK_2a 95 124 IPR002110 GO:0005515
Pste5g01827 1130 SMART ANK_2a 61 90 IPR002110 GO:0005515
Pste5g01827 1130 Pfam Regulator of chromosome condensation (RCC1) repeat 205 259 IPR000408 -
Pste5g01827 1130 Pfam Regulator of chromosome condensation (RCC1) repeat 315 365 IPR000408 -
Pste5g01827 1130 Pfam Regulator of chromosome condensation (RCC1) repeat 154 201 IPR000408 -
Pste5g01827 1130 Pfam Regulator of chromosome condensation (RCC1) repeat 264 311 IPR000408 -
Pste5g01827 1130 ProSiteProfiles Ankyrin repeat profile. 95 127 IPR002110 GO:0005515
Pste5g01827 1130 PRINTS Chromosome condensation regulator RCC1 signature 414 432 IPR000408 -
Pste5g01827 1130 PRINTS Chromosome condensation regulator RCC1 signature 207 223 IPR000408 -
Pste5g01827 1130 PRINTS Chromosome condensation regulator RCC1 signature 317 331 IPR000408 -
Pste5g01827 1130 PRINTS Chromosome condensation regulator RCC1 signature 154 170 IPR000408 -
Pste5g01827 1130 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Pste5g01827 1130 PRINTS Chromosome condensation regulator RCC1 signature 188 201 IPR000408 -
Pste5g01827 1130 PRINTS Chromosome condensation regulator RCC1 signature 264 280 IPR000408 -
Pste5g01827 1130 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 314 IPR000408 -
Pste5g01827 1130 ProSiteProfiles Ankyrin repeat profile. 61 93 IPR002110 GO:0005515
Pste5g01827 1130 MobiDBLite consensus disorder prediction 974 1096 - -
Pste5g01827 1130 ProSiteProfiles Ankyrin repeat region circular profile. 95 126 - -
Pste5g01827 1130 SUPERFAMILY RCC1/BLIP-II 118 430 IPR009091 -
Pste5g01827 1130 MobiDBLite consensus disorder prediction 974 998 - -
Pste5g01827 1130 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 153 204 IPR000408 -
Pste5g01827 1130 Pfam Ankyrin repeats (3 copies) 35 126 IPR002110 GO:0005515
Pste5g01827 1130 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 191 201 IPR000408 -
Pste5g01827 1130 SUPERFAMILY RCC1/BLIP-II 397 506 IPR009091 -
Pste5g01827 1130 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 368 IPR000408 -
Pste5g01827 1130 MobiDBLite consensus disorder prediction 756 772 - -
Pste5g01827 1130 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 205 263 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01827 Pste-Chr5 11562439 11571440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01827 34 135 Acyl Lipid Metabolism Gene Families AT5G53470 34.314 2.57e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01827 5 11562439 11571440 Pste5g01827 5 11562439 11571440 ECH