Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01343 GCAGCGGGAGAGGGATGAAAACGAAAACTTGGAAGACCGAAAGGGAAAAGTGGCGCGAGCTTTGGAAACGAAAACGTCATCGTTGCGAGGCGGCAATCAAATCCGTGAACGCGCCCTCGCTTGCAGTCAACAAATCTGAGCCGTCCACCGCCACTAAAACTAAACTACTCAATCCATGGATGCTCCACTTTCAGAAGCTCGCTCTCGAACTCAAGTGCCCTCTCTGTTTGAGTTTGTTCAAGAGGCCGGTGTTGCTTCCGTGCAACCACTTGTTCTGCAGTTCCTGTTTGGCTGATTACATGACCGCCGGTTCCGAATGTGCAGTTTGTAAGGCAAATTATGTTCAAACAGATATAAGGCACGTGCCTTTTGTGGAGAATGTGGTAGCAATTTATAGAAGCTTGGATGCCACCTTTTGTGCTAGTCTGTTTCAGCAACGTTCTTCTGGTCATGTGAGTGTTTTGGAGCCGTGCCAAGCATTGCCTAATTCAACTTCTTGGTTTTTAAAAGCTGGCAAGCTTCCTCGGAATTTAATTAATTCAAATGTGGTTGGCAAGAATAACAAATCAAAGATTGCTGTGCATGATAAAGCTGAGGAGCGTGAGTTGTCTTGTGGTAGAGAGAAGCCGAATCCAATGCAATCTTCTTCCCAGATGGAACTTGGGAGCCGGGAAGATTGTGGAGTTGTAGAAATGGATGTGAATCAAGTGACACAATCAGCACCAGATAGCCCTCCTTTTTGTGATACCAAGGGTTCAGACAATGACTGCAGTGATCAAGACAGTGAGCATCCATCACAGCCTGGTAGATTGGAGAATTCTTCACTACAGAGGACAAGCACTGGAAATAGAAATTTGAAAGAAAGAATGGGACAACTCAGGTCTGAAAGTTCGGCCTCTGAAACTGAGGGTCATGCAAGAGACCTCAAGAGACAGAAAAGTATGGACCATAAGTCTGGAAATGACCCTGGTGCACAACTCCCCACAAATACTCTAACTGAGTTGTGTCCAACTGGAATTATCTGTTCATTTTGCCAATCCTCTAAAACCTCAGAGGCTACTGGGCCAATGCTGCATTATGCAAATGGGAACTTAGTTACAGGAGATGCAGCAAATCAGCCAAATGTCATACCTGTGCATAGAATTTGCATTGACTGGGCACCACAAGTGTACTTTGTTGATGAAGTCGTTAAGAATTTGAAGGCTGAACTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAAGGCGCTGCTCTTGGCTGCTATGTCAAATCCTGTAGAAGAACTTATCATGTTCCTTGTGCAATGGACATCTCAACTTGTCGTTGGGATCATGAGGATTTTCTGTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTGAGAAAATCAGGTCTAAGAAACAGGCAACTCAGAAACATCTCACTTTGTCTCATCTGCCATCTCACCACTCAAATTCTCTTGAAGTTTCAGAGGACAATAGTAAAAAATTGGTATTTTGTGGATCTGCTCTATCAAATGAAGAAAAGTTACTTTTGGTCAATTATGCAAGCAAGGTCGGTGCTACTGTGACCAAGTTCTGGACCTCAAATGTCACCCATGTAATTGCAGCAACTGATGCAAATGGAGCATGCTCCCGGACATTGAAAGTTCTTATGGCAATTCTAAATGGTCGATGGGTTCTAAAAATGGATTGGATAAAAGCATGCATGGAAGATATAAATCCTGTAGATGAAGAAGCATATGAAATTAATGTTGACAACCAAGGGTGTCAAGGTGGTCCGAAAGCTGGCAGACTTAGGGCGTTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAATTTTATTTTTCTGGGGATTATGTGTCAACTTATAAGGAAGATCTTGAAGAATTAGTTGAAGTGGGTGGAGGCACTGTTTTGAGAAGCAAGGAAGAATTGGAAGTGAAAAGACGTGAATACAAAGTGAACTCTTCAAAGTGTCTGGTTGTTTACAATCTTGATCCCCCACAAGGATGCAAGTTGGGGGATGAAGTTTCAATTCTTTGGCAAAGGCTAAACGACGCAGAGGATTTAGCTGCTAACACTTTACAAGTCATTGGTCACACTTGGATTCTTGAATCAATTGCTGCATGTAAATTGCAGCCTTTTGTTAACTAAAATGCATTAGGTAGCTGATATATTGTCCTTCACTTGATAGGGCGTTCATTCTGCAAGAGTTTATTAATCCTGTACAGGATTTAGCTTGAATTTATTTGTCTTGATGAGTCTCTGGCTGTTAGGTTGTTTTGTTTTGTTTATGTAACATCAAGTATTTATTTACTAGATGTCTACTTTTGCCTCGGCTTGATGACTTGACGTGGAATGTACTCTAGCTATGTTGCCTCTTTACGTTTAAAAATTAGTTGAGATGGATAATGATTCATGAGGCCTCATGCATACTGTAAGTTAAATGCCAATGCTAATTCTCACGCAACAAACTCAATGAGGTGTAACCAATGTATTAAACTATTTATATTATCAGATTATCATGA 2545 0.4165 MKTKTWKTEREKWRELWKRKRHRCEAAIKSVNAPSLAVNKSEPSTATKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCSSCLADYMTAGSECAVCKANYVQTDIRHVPFVENVVAIYRSLDATFCASLFQQRSSGHVSVLEPCQALPNSTSWFLKAGKLPRNLINSNVVGKNNKSKIAVHDKAEERELSCGREKPNPMQSSSQMELGSREDCGVVEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPSQPGRLENSSLQRTSTGNRNLKERMGQLRSESSASETEGHARDLKRQKSMDHKSGNDPGAQLPTNTLTELCPTGIICSFCQSSKTSEATGPMLHYANGNLVTGDAANQPNVIPVHRICIDWAPQVYFVDEVVKNLKAELARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISTCRWDHEDFLLLCPVHSNVKFPCEKIRSKKQATQKHLTLSHLPSHHSNSLEVSEDNSKKLVFCGSALSNEEKLLLVNYASKVGATVTKFWTSNVTHVIAATDANGACSRTLKVLMAILNGRWVLKMDWIKACMEDINPVDEEAYEINVDNQGCQGGPKAGRLRALANEPKLFSGLKFYFSGDYVSTYKEDLEELVEVGGGTVLRSKEELEVKRREYKVNSSKCLVVYNLDPPQGCKLGDEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVN 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01343 718 ProSitePatterns Zinc finger RING-type signature. 83 92 IPR017907 -
Pste5g01343 718 Gene3D BRCT domain 606 711 IPR036420 -
Pste5g01343 718 SUPERFAMILY BRCT domain 608 716 IPR036420 -
Pste5g01343 718 Pfam Zinc finger, C3HC4 type (RING finger) 65 108 - -
Pste5g01343 718 ProSiteProfiles BRCT domain profile. 604 718 IPR001357 -
Pste5g01343 718 Pfam BRCA1 C Terminus (BRCT) domain 498 570 IPR001357 -
Pste5g01343 718 MobiDBLite consensus disorder prediction 233 325 - -
Pste5g01343 718 FunFam Breast cancer type 1 susceptibility protein homolog 494 600 - -
Pste5g01343 718 ProSiteProfiles Zinc finger RING-type profile. 68 106 IPR001841 -
Pste5g01343 718 FunFam Breast cancer associated RING 1 331 456 - -
Pste5g01343 718 SMART ring_2 68 105 IPR001841 -
Pste5g01343 718 SMART ring_2 407 453 IPR001841 -
Pste5g01343 718 CDD ePHD 374 453 - -
Pste5g01343 718 SUPERFAMILY BRCT domain 497 584 IPR036420 -
Pste5g01343 718 MobiDBLite consensus disorder prediction 262 294 - -
Pste5g01343 718 CDD BRCT_Bard1_rpt1 497 571 - -
Pste5g01343 718 MobiDBLite consensus disorder prediction 190 218 - -
Pste5g01343 718 SMART BRCT_7 491 573 IPR001357 -
Pste5g01343 718 SMART BRCT_7 606 711 IPR001357 -
Pste5g01343 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 456 IPR013083 -
Pste5g01343 718 Gene3D BRCT domain 493 599 IPR036420 -
Pste5g01343 718 ProSiteProfiles BRCT domain profile. 497 583 IPR001357 -
Pste5g01343 718 FunFam Breast cancer associated RING 1 53 138 - -
Pste5g01343 718 Pfam BRCT domain, a BRCA1 C-terminus domain 606 715 IPR001357 -
Pste5g01343 718 Coils Coil 278 298 - -
Pste5g01343 718 FunFam BRCA1-associated RING domain protein 1 606 711 - -
Pste5g01343 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 137 IPR013083 -
Pste5g01343 718 SUPERFAMILY RING/U-box 65 128 - -
Pste5g01343 718 ProSiteProfiles Extended PHD (ePHD) domain profile. 334 454 IPR034732 -
Pste5g01343 718 MobiDBLite consensus disorder prediction 295 313 - -
Pste5g01343 718 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 335 716 IPR031099 GO:0006281|GO:0006974
Pste5g01343 718 Pfam PHD-like zinc-binding domain 375 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01343 Pste-Chr5 8682375 8688945 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01343 5 8682375 8688945 Pste5g01343 5 8682375 8688945 ECH