Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00954 AGCGGGCCGAAGAAAGACTAGAAAAAGCCCAATATTTGGAACGGAGAAGCGCCAAACCCTAACTCAGAGGTTAGTTTCTTTGTGAGTGGCAACATGGAACCGGAATCCAACAACGACATTGAAGTCGCTCCGGCACTCATCGCCGTTCACCCCGACCAGTCCTACATCACCGTCGCGGTGGGCCCGCACCTCCGCGTCTTCGATCTTATTGGCGGTTCCGCAGCTTCTTTAACGGACGACTCTGATGCCGTCCCGCTCCACAAGGATAACATCAGAGCCATTCGCTTCGGCGCCAAAGGAAAACTATTCGTATCCGCCGGTGACGATAAAACCGTCAAGGTCTGGTCAACACAGTCCTGGCGTTGCATCTCCTCCGTGTCCTCCGAGAAGAGAGTAACTGCACTTGCAATTAGCAACGATGGAACCTTCGTGTGCTTCGCCGACAAGTTCGGCGTTGTTTGGGTTGTTGATCTCGATCCTCCGTTACGCGATAAGAAACCCGCACCGCTTTTTTCTCACTATTGCAGCATCATCACTAGCTTGGATTTTTCACCGGATGGTCGCTTTATTGTAAGCGCCGATCGTGATTTCAAAATTCGCGTTACTAATTTTCCCAAGAAGCCATTAAATGGAGCTCACAAGATACAAAGTTTCTGTCTCGGTCATACAGAGTTTGTTTCCTGCCTTGCATTCGTTCAGTCTCCGGAATGTCCTCAAGGCCTTCTTCTCTCTGGCGGTGGTGATTCAACAGTTCGATTATGGGACATTGACTCTGGAGCACTCGTAGATACATGTGAGGTAGCAATTAAGGCAGGACTTTTAGAGTCTAATGGTAAAGCAGAGGAGCATGGCCATGCTGTTACTGATTTATGCACCGTCCTGGATGGTTTGCTTGTTGCAGTGGCAATTCAGAGCTTGCAAGGAATAGTATTGTTGAGTTGCAATGTCGCTGCACAAACACTTTCTGTTGCCAAGGTGGTTTCCATTGCTGGAGAGGCCTTTGTCCCTACCTGCTTAGGGAGCAGCTCTTCTACAGGGAAATTATGGATGGTTACAGGTGTCTCTAGTTTACCTGGTTGCAATTATCCCTCTTTGGCTCGTGTACGAGTAATTTCTGATATTGATGTTGAGCAAGAGCCAGTTGTTCTGGGAGATGACGACATACCTGGTGGAGAAAAGCTGCTAGAAACGTTGCAAGGAACTGCATCCGTCGATGACAACGCATTCCTAGCAGCAGCTGAAGCTGTCAAAACAGCAATGCGCAACCTATTAATAAAAAAACAATACCCTTCGGAGAATAGAGAATCTAGGAAGAAAAGCAGAAATGATAGAAAACTCAAGGGCTAGCATTTTTTTAATATTATGAATCAGTTTAGCTCGGTTTCCTTGGTCACTAGTCTCCAAAGACTATGCTTGACGACCTATTTTATTTATTTTCTGATACAGTGCATCTGAAATATTAACACCAGATTGCCATCAATTTTGTGGTCTGCGTTTTTGAATTGTTCGTAACATTTTGTAATCATTGAATGCAGTGTAGTAAAATTAAATTAATGATACCATGACATCTGAGCCCTTCTAATTGTGATAACTTCTGGC 1599 0.4559 MEPESNNDIEVAPALIAVHPDQSYITVAVGPHLRVFDLIGGSAASLTDDSDAVPLHKDNIRAIRFGAKGKLFVSAGDDKTVKVWSTQSWRCISSVSSEKRVTALAISNDGTFVCFADKFGVVWVVDLDPPLRDKKPAPLFSHYCSIITSLDFSPDGRFIVSADRDFKIRVTNFPKKPLNGAHKIQSFCLGHTEFVSCLAFVQSPECPQGLLLSGGGDSTVRLWDIDSGALVDTCEVAIKAGLLESNGKAEEHGHAVTDLCTVLDGLLVAVAIQSLQGIVLLSCNVAAQTLSVAKVVSIAGEAFVPTCLGSSSSTGKLWMVTGVSSLPGCNYPSLARVRVISDIDVEQEPVVLGDDDIPGGEKLLETLQGTASVDDNAFLAAAEAVKTAMRNLLIKKQYPSENRESRKKSRNDRKLKG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00954 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 88 - -
Pste5g00954 417 Pfam WD domain, G-beta repeat 188 224 IPR001680 GO:0005515
Pste5g00954 417 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
Pste5g00954 417 Pfam WD domain, G-beta repeat 141 170 IPR001680 GO:0005515
Pste5g00954 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 233 IPR001680 GO:0005515
Pste5g00954 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Pste5g00954 417 MobiDBLite consensus disorder prediction 396 417 - -
Pste5g00954 417 ProSitePatterns Trp-Asp (WD) repeats signature. 211 225 IPR019775 -
Pste5g00954 417 Gene3D - 13 95 IPR015943 GO:0005515
Pste5g00954 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 228 - -
Pste5g00954 417 SMART WD40_4 180 224 IPR001680 GO:0005515
Pste5g00954 417 SMART WD40_4 47 85 IPR001680 GO:0005515
Pste5g00954 417 SMART WD40_4 133 172 IPR001680 GO:0005515
Pste5g00954 417 SMART WD40_4 88 126 IPR001680 GO:0005515
Pste5g00954 417 PANTHER WD40 REPEAT PROTEIN 4 12 409 IPR028884 GO:0036265
Pste5g00954 417 SUPERFAMILY WD40 repeat-like 16 270 IPR036322 GO:0005515
Pste5g00954 417 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 99 351 - -
Pste5g00954 417 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 22 409 IPR028884 GO:0036265
Pste5g00954 417 Gene3D - 96 245 IPR015943 GO:0005515
Pste5g00954 417 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 12 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00954 Pste-Chr5 6274031 6276828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00954 56 231 Miscellaneous Gene Families AT5G08390 24.022 5.92e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00954 5 6274031 6276828 Pste5g00954 5 6274031 6276828 ECH