Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00782 ATGGCAACTCTCGTGCCACGCTTCTCATTCTCTGTGATTCCTCAGAATCATTACAAACCCAAATGCTCTTGTTTCCACAAATCCTTTATCCAAAGGAAGCACTTTCTGCACCAACATGGATTGCAAAGCCTCGCTACCCTCTTTTCCCCGAATCCCACTTCCAAATTGTGTGCCACGTCACCATTATCCATTGAGGAAACGGAGCAGCAACTCGGAACATTATCCAGACCCCAAGACTTGAAAGGGGCGTTGGCGTATTTGTTTAGGACTGAAACTGGTGGAGGTTTGGTGAAGGTTTATGTCACAAAGAGGATCGATAGGTATTCTGTTTACATTGAGATTTCCTTGTTGGATGTAAGTGGTGGCGTAGGTGAAACGCTTTTGTTGTGTTGGGGTGTGTACAGAGCTGATTCATCGTGTTTTGTGGATCTGGATTCGAGTGGTTTGAGTGAAAATGCGGCAAAGGGGATGAATGTTAGTCCCTTGGTGCAAGCTTCTGGTGATAAGTTTGCAGTTGAATTGGAATTTGATGCCAAATGTGTTCCTTTGTACTTGTCATTTTTCTTGATGTCATCTTTGGATGCAGGGCTGGAGATCAGAAGCCATAGGAGAACGAATTTTTGCGTGCCGGTTGGGGTGCTTCCGGGTTATCCTTCTCCTTTGGGGCTCTCCTATTCTCCTGATGGGTCTGTGAATTTTGCTATTTTCTCTAGACATGCTGAGAGTGTGATTTTGTGCTTGTATGATGAGAATGGTGTGGAGCAGCCTGCTTTGGAGCTTGATTTGGATCCTTATGTGAATAGGACAGGAGATATCTGGCATGTATCCATTGAGAATGCCAAGAGTTTTGTGAATTATGGTTATCGCTGCAGAGGGGGCGTTTTTAAGCAGAACAAGGATGGTGGTTTTGCTGAGCATGTTGTTTTGGATCCTTATGCTAAGATTATTGGAAATTCTTATCCTGTTGGTCATGGATTAGTAAAGAATCTTGGATGGTTGGGGAAGGAACCTGTTTTTGAGTGGGGTGATGATCATCATCCGGATTTGTCCTTGGAGAAACTTGTGGTTTATAAGTTGAATGTGCAGCGCTTTACTCAGCATGAGTCCAGCCAACTTTCAAGTGATTTAGCTGGGACCTTTGCTGGTTTAGCTGAGAAGGTGCAGCATTTTAAAGATCTAGGTGTCAATGCCATTCTGCTGGAGCCGGTTTTCATGTTTGATGGGAAAAAGGGGCCATATTTTCCTTGCCACTTTTTCTCTCCGGTGTGCATATATGGACCATCTGGTAGTCCTGTATCTGCTATTACCTCTATCAAAGAGATGGTTAAAACTATGCATGCCAACGGGATAGAAGTTCTTCTGGAAGTTGTTTTCTCCAATACTGCTGAGACTGGTGCTCTACAGGGAATCGATGACTTGTCCTACTATCGTGCAAAAAGAGTTGGTGATTTGAAGAGTGCTTTGAACTGTAACTATCCTATAGTGCAAAATTTGATTCTGGATAGTCTTCGGCATTGGGTGACCGAGTTTCACATCGATGGCTTCTCTTTCATAAATGCTTCCCACTTGTTAAGGGGATTTAATGGAGAGTACTTGTCTCGACCTCCACTGATTGAAGCAATTGCTTTTGACCCAATACTTTCCAAGACTAAAATCATTGCAGATTGTTGGGATCCCTATAAAATGGTAGCAAAAGAAATTCGCTTTCCTCATTGGATGAGATGGGCTGAAATAAATACAAATTTTTGTAATGATGTGAGGAACTTTTTAAGGGGTGAAAGTCTTCTTAGCGACCTTGCAACAAGACTATGTGGGAGTGGGGACATTTTTTCTGGTGGACGAGGTCCTGCATTCTCCTTTAATTACATTGCCAGGAATTTGGGACTTTCTCTTTTGGACTTAGTTAGCTTTACCAGTGAGACAGAATTAAGTTGGAATTGTGGAGAAGAAGGAGCTACTAATAACACCACTGTCCTTGAAAGACGACTCAAACAAATCCGCAATTTCCTTTTCATCTTGTTTATGTCATTAGGAGTACCTGTTCTGAACATGGGAGATGAGTGTGGTCAGACTGCATACGATGATATAAACCCTTTCAATTGGAGTGCTTTGAAAACAGGCTTTGGTAAACAAACCTCACAATTCATTTTCTTTTTAAGTTCATTGAGAAGGAGGAGGAGTGATCTCCTTCAGAGGAGGAGCTTCTTAAAAGAAGAAAACATTGAATGGTATGGAAGTGATGGGGCCGCACCAAGATGGGCAGACGCATCATGCAAGTTCCTGGCCATGACTTTGAAGGCTGAATTAAGGGGGCTCATAGAGAGTTCTGTATCTTCTGATATATCTGGGGATCTATTTATTGCCTTTAATGCAGCTGATCATCCACAAACTACACTTTTACCCTTGCCTCCAAAAGGGATGTCATGGTACCGTTTAGTTGACACGGCTCTTCCTTCTCCTGGCTTTTTCTCTATCAGTGGTGAACTTGTCCCTAAGCTGAAGGCGGGTTTCTTAACTTATAAAATGAAGCCGTACAGCTGCACTTTGTTTGAGGCAATCAATCCTACAATTTAA 2574 0.4266 MATLVPRFSFSVIPQNHYKPKCSCFHKSFIQRKHFLHQHGLQSLATLFSPNPTSKLCATSPLSIEETEQQLGTLSRPQDLKGALAYLFRTETGGGLVKVYVTKRIDRYSVYIEISLLDVSGGVGETLLLCWGVYRADSSCFVDLDSSGLSENAAKGMNVSPLVQASGDKFAVELEFDAKCVPLYLSFFLMSSLDAGLEIRSHRRTNFCVPVGVLPGYPSPLGLSYSPDGSVNFAIFSRHAESVILCLYDENGVEQPALELDLDPYVNRTGDIWHVSIENAKSFVNYGYRCRGGVFKQNKDGGFAEHVVLDPYAKIIGNSYPVGHGLVKNLGWLGKEPVFEWGDDHHPDLSLEKLVVYKLNVQRFTQHESSQLSSDLAGTFAGLAEKVQHFKDLGVNAILLEPVFMFDGKKGPYFPCHFFSPVCIYGPSGSPVSAITSIKEMVKTMHANGIEVLLEVVFSNTAETGALQGIDDLSYYRAKRVGDLKSALNCNYPIVQNLILDSLRHWVTEFHIDGFSFINASHLLRGFNGEYLSRPPLIEAIAFDPILSKTKIIADCWDPYKMVAKEIRFPHWMRWAEINTNFCNDVRNFLRGESLLSDLATRLCGSGDIFSGGRGPAFSFNYIARNLGLSLLDLVSFTSETELSWNCGEEGATNNTTVLERRLKQIRNFLFILFMSLGVPVLNMGDECGQTAYDDINPFNWSALKTGFGKQTSQFIFFLSSLRRRRSDLLQRRSFLKEENIEWYGSDGAAPRWADASCKFLAMTLKAELRGLIESSVSSDISGDLFIAFNAADHPQTTLLPLPPKGMSWYRLVDTALPSPGFFSISGELVPKLKAGFLTYKMKPYSCTLFEAINPTI 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00782 857 Gene3D - 739 856 IPR013780 -
Pste5g00782 857 SUPERFAMILY (Trans)glycosidases 339 729 IPR017853 -
Pste5g00782 857 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 220 313 IPR004193 GO:0004553|GO:0005975
Pste5g00782 857 CDD AmyAc_plant_IsoA 350 731 IPR044096 GO:0019156|GO:0019252
Pste5g00782 857 CDD E_set_GDE_Isoamylase_N 219 357 IPR044505 -
Pste5g00782 857 Gene3D Glycosidases 335 738 - -
Pste5g00782 857 Pfam Alpha amylase, catalytic domain 378 464 IPR006047 GO:0005975
Pste5g00782 857 SUPERFAMILY E set domains 215 346 IPR014756 -
Pste5g00782 857 SMART aamy 358 726 IPR006047 GO:0005975
Pste5g00782 857 Gene3D Immunoglobulins 204 328 IPR013783 -
Pste5g00782 857 Coils Coil 719 739 - -
Pste5g00782 857 SUPERFAMILY Glycosyl hydrolase domain 738 852 - -
Pste5g00782 857 PANTHER GLYCOGEN DEBRANCHING ENZYME 183 852 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00782 54 856 Glycoside Hydrolase AT1G03310 56.448 0.0 915
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00782 5 4998461 5001034 Pste5g00782 5 4998461 5001034 ECH