Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00410 CGTCAGTGTTGGTCCTCTTCCCAAGCAATTCTGATTGGAGAAATAAGAGTGAGAAATGGAGAAGGCACTGTTGCTCCTCTTCCCATTCTTCTTTCTCACCGCCACGTCACACCTTCTAAACCCCATCCCAATCACGTTCTCCGTCGTTGACTTCGGTGCCGCCGGCGATGGCCTCCGCTACGACACTAGAGCAATCCAGTCGGCAATCAACTCCTGTCCGGAGGGGAGTACCTGCCGCGTCACCTTCCCGGCGCCGGGAATATACCTGACTGCCACCGTGTTCCTGAAATCCGGCGTGGTCTTGAACGTGGAGGCCGGGGCCACCATCCTCGGCGGCACGAAGCTGGAGGACTACCCGAAGGAGTCGTCACGGTGGTACGTGGTTGTGGCGGAGAACGCGACGGACGTCGGAATCGGCGGCGGCGGAGTGGTGGACGGTCAGGCTGGGAAGTTCGTTGTGAGGGAAGATTCGAGGAAGAACGTTATGGTTAGTTGGAATGAAACAGGGGCTTGTTTGGGAGACGAATGCAGACCCAGGCTCATAGGTTTTCTCGATTGCAACAATGTTTCACTCTCTAACATTACTCTCAACCATCCTGCTTATTGGTGCTTACACGTGGTGCGGAGTAACAACATATCCATTCACGATATTTCAATTTATGGAGACTTTAATATACCAAACAACGATGGGATTGACATTGAGGACTCGAACAACACAGTAATCACTCGATGCCACATTGATACAGGGGATGATGCGATCTGTCCCAAGTCATACATAGGTCCTGTTTACAACCTTACAGTCACCAACTGTTGGATTCGATCCAAATCTTCTGCAATTAAACTCGGCAGTGCTAGTTGGTTTGATTTCAAGCACTTTGTGTTTGACAACATCAATATTGTTGATTCTCATAGAGGGATTGGGTTCCAGATCCGCGATGGAGGAAATGTAAGTGACATTGTATTCTCTAACATAAATATCAGCACAAGATACTATGATCCCTTATGGTGGGGGAGAGCAGAACCTATCTATGTCACCAGTTGCCCACGAGACTCGACATCAAAGGAGGCTTCAATCTCAAATGTACTTTTCATTAACATCACTGCAAATTCTGAAAATGGCATCTTCCTCTCTGGTTCAAAGAGAGGACTCTTAAGAAATTTGAGATTCATCAACATGGACATAACTTACAGAAGGTTCACCAATTATGCTGGTGGGTTATTGGACTATAGGCCAGGATGCAAAGAGTTGGTTAAACACAGGACTGCGGGCATAATGATGGAACACATTGAAGGTCTTGAGGTTAATAATGTTGAAATGAAATGGTCAAACAATCAAATGGAGCAGTGGAATAATCCTTTAGAGTTCAGGCCGTCTACTGTGAACAACATATCTTTCCTTAATTTTAATTCTGGTTTATATACAAATAGCAAATCAGATTATTAACTTTGGGTCTGCAAAGGGACAATGTTCGAAGCACATAATGAAAAAGCTCAGCAGACAGGTGGAGCATTTGCTCTGTGCCTCTGCATTAAAAAAAATTAAAGATAGATCAATTGTTTATCCTTGATCTAGTGCTTGATTTTCTGCATCTGTAATATGAATATAGTTGATTTATAAAATTGATGCAATTTCAGTGAATTTTGGATTTATAAAATTGATACAATTTTTTGC 1672 0.4426 MEKALLLLFPFFFLTATSHLLNPIPITFSVVDFGAAGDGLRYDTRAIQSAINSCPEGSTCRVTFPAPGIYLTATVFLKSGVVLNVEAGATILGGTKLEDYPKESSRWYVVVAENATDVGIGGGGVVDGQAGKFVVREDSRKNVMVSWNETGACLGDECRPRLIGFLDCNNVSLSNITLNHPAYWCLHVVRSNNISIHDISIYGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSYIGPVYNLTVTNCWIRSKSSAIKLGSASWFDFKHFVFDNINIVDSHRGIGFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTSCPRDSTSKEASISNVLFINITANSENGIFLSGSKRGLLRNLRFINMDITYRRFTNYAGGLLDYRPGCKELVKHRTAGIMMEHIEGLEVNNVEMKWSNNQMEQWNNPLEFRPSTVNNISFLNFNSGLYTNSKSDY 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00410 462 Pfam Glycosyl hydrolases family 28 60 378 IPR000743 GO:0004650|GO:0005975
Pste5g00410 462 Gene3D - 21 386 IPR012334 -
Pste5g00410 462 PANTHER PECTIN LYASE-RELATED 24 423 - -
Pste5g00410 462 SMART pbh1 191 217 IPR006626 -
Pste5g00410 462 SMART pbh1 335 360 IPR006626 -
Pste5g00410 462 SMART pbh1 244 265 IPR006626 -
Pste5g00410 462 SMART pbh1 298 320 IPR006626 -
Pste5g00410 462 SMART pbh1 168 190 IPR006626 -
Pste5g00410 462 SMART pbh1 218 239 IPR006626 -
Pste5g00410 462 SUPERFAMILY Pectin lyase-like 9 390 IPR011050 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00410 26 462 Glycoside Hydrolase AT3G57790 68.973 0.0 639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00410 5 2718233 2721081 Pste5g00410 5 2718233 2721081 ECH