Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00096 TTTGTAATTTGCGACTAGCAATGAAGAAGTGGAGTACGGAATAGTGTAGACAAGTGACTGTTCTTGACCACTAGTTATTTGGTTAATTGATTTTGATTTTCGTAACCCTAGTCACCACCGTGAAACCCCAACTTCATTCTCACTCCACCGTCACCGTTTCTTCAATTCTCACCGTGAAAATTCTCAGATATGCTCTTTCTTTAACCTATGAACAACAACAACAACAACGCTTCCAGGCCCCTTGGGGTTGGGGCCTCTTCCTCCGGTTACCCACCACATTCCCAAATTGCCCCTGCTCAATACCAACTCTCCCAGGCCCACGCCATCGTCCAAGCCCAGTTCCAGGCCCAGCTCCAAGCCCACGGCCTCTCCCTCAACCCCAACCCCAACGCCAAACGCTTCCCCCCAAAAACCCCCGTTCACACCGCCCCGCCGTTCAAACTCCCCGAGCCCGGGCCCGGGGCCCGCAGAAAGAAGTCGAAGCCCAACGAGAAACAGCTCCCCGAGAAAGCCGCGGCGATTCTCCCGGAGTCCGCGGTCTACACGCAGCTTCTGGACGTAGAAGCGCGTTTGGACGCCGCGCTGGCTAGAAAGAAGGTTGACATACAGGAGGCGCTGAAAAACCCTCCCTGTATTCAGAAAACCCTAAGAATTTTCGTGTTCAACACGTTTTCGAGCCAGAATCGCGGCGAGGCTCCCTCGTGGACGCTCAAGATTGTTGGAAGGATAATTGAAGATGGTGAAGATCCTGATCAGGCTGGAGGGTTTCAGAGATCAGCTATGCTGTATCCGAAATTCTCTGCCTTTTTCAAAAGGGTCACCATTGCACTCGACAAGAGGCTCTATCCCGAAAACCACATTATCTCATGGGAGAATTCAAGGTCCTCTGCTCCTCAAGAAGGTTTTGAGGTTAAGAGAAAAGGGGATCAGGAGTTTCCCGTGCAGATTCGGTTGGAGATGAATTATGTGCCTGAGAAGTTTATGCTGTCACCGGCATTGAGAGAGGTTCTTGGAATTCAGGTTGATACAAGGGCAAGGATTGTTTCGGCGATATGGCATTATGTTAAGGCTAGGAAGTTGCAGAATCATAGTGATCCATCGTTTTTTCACTGTGATCAGGCTCTTATGAAGGTGTTTGGGGAGGATAAGGTGAAGTTTTCGATGGTTTCGCAGAAGATATCGCAGCATTTGTTTCCCCCTCAGGTTATACTTTTGGAGCATATGATCAAGCTCTCTGGGGATAATCCTTCTGGGTCTGCTTGTTATGATGTCGCGGTTGATGTTCCTTTTCCCATTCTGAGGGAAATGTCTGCTTTGGTGGGGAATGTGGAGAGGAACAAAGAAATTGATGCTTGTGATGAATCCATATGTGGAATCATTAGAAAAATACATGAGCATAGGAGAAGGCGCGCGTTCTTTGTTGGGTTTAGTCAGTCTCCTTTGGAATTTATCAAGGCCTTAGTTGAATCTCAGAACAAGGATCTGAAAGTTTTAGTTGCAGAGTCTGGTCACAGTGCTGAAAAGAACAAATCGGATTTCTTTAAGCAACCATGGGTTGAGGATGCTATTATGCGCTATTTGAATCGCAAACCAGCTGCAGGAAGCAATGCTCCAGGGAGCACATGATGCCCCGGAGTTCAATATTTAGTCTTCCATGCATGCTATATTATTATTGTACATGGCTCATTTGAGCTCATGGAAGATCAGATAGTTGTTTATGTTGATAGTAATTTATTAGGAGTTTCAGTACAAGCAACTTGCTTTGGATTTCATGTTAGTTAAGTACAAGCAATATCCTTGATAGTTGATAGTTAGGATATTGGTGCACAGTAATTTAAGACTTAAGAATGGTGCATAAAGTAAAGGGAGAAAAGAAACTTTGCATACCATGACTGTTGTTTTCGTCTAATTTATATGCTGAATTTGATTTGAGTAAAAATTAACTAACAGCTCCAATGTCTCGCTTGTCAGAGTTTATACATATTTCCAAATATGAGTGTAGTAAAATGAGATGGTCTTGTGATGATTGAATGTAGACATTTTTCTTCTTAAAATTTGGGTTTAAGAAAAAAATGTTTGTGTAAAATAGAATACAATCAGTGTTAAGTCGTTGACATTGAAATCAACAGTTTAACTTCTATGTAGATTCAATGTTAGAGGAGTGATAGCAACACATTTC 2179 0.4406 MNNNNNNASRPLGVGASSSGYPPHSQIAPAQYQLSQAHAIVQAQFQAQLQAHGLSLNPNPNAKRFPPKTPVHTAPPFKLPEPGPGARRKKSKPNEKQLPEKAAAILPESAVYTQLLDVEARLDAALARKKVDIQEALKNPPCIQKTLRIFVFNTFSSQNRGEAPSWTLKIVGRIIEDGEDPDQAGGFQRSAMLYPKFSAFFKRVTIALDKRLYPENHIISWENSRSSAPQEGFEVKRKGDQEFPVQIRLEMNYVPEKFMLSPALREVLGIQVDTRARIVSAIWHYVKARKLQNHSDPSFFHCDQALMKVFGEDKVKFSMVSQKISQHLFPPQVILLEHMIKLSGDNPSGSACYDVAVDVPFPILREMSALVGNVERNKEIDACDESICGIIRKIHEHRRRRAFFVGFSQSPLEFIKALVESQNKDLKVLVAESGHSAEKNKSDFFKQPWVEDAIMRYLNRKPAAGSNAPGST 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00096 472 SUPERFAMILY SWIB/MDM2 domain 248 338 IPR036885 -
Pste5g00096 472 SMART swib_2 254 333 IPR019835 -
Pste5g00096 472 Gene3D SWIB/MDM2 domain 250 333 IPR036885 -
Pste5g00096 472 MobiDBLite consensus disorder prediction 63 82 - -
Pste5g00096 472 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 93 427 - -
Pste5g00096 472 MobiDBLite consensus disorder prediction 54 98 - -
Pste5g00096 472 CDD SWIB_like 260 328 - -
Pste5g00096 472 MobiDBLite consensus disorder prediction 83 97 - -
Pste5g00096 472 MobiDBLite consensus disorder prediction 1 29 - -
Pste5g00096 472 ProSiteProfiles SWIB/MDM2 domain profile. 253 330 IPR003121 -
Pste5g00096 472 Pfam SWIB/MDM2 domain 257 328 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00096 Pste-Chr5 785324 788208 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pste5g00096 SWIB 1.7e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00096 5 785324 788208 Pste5g00096 5 785324 788208 ECH