Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02975 ATGGATATCAATCCGTTCGGTAGTACAGTGGGCTTCTGGAAGCTTCCTCTGCAAGGAAACTCTATGATACCATTGGCCAAATCACTGTTGTGGAGCATTTTTCGTTTAGATTATGATTACACTGTGGATGAGAGACTCCATTTGAAGGAGGAGTGGGGCTATAACCAAAAGCAGTTTTCACTTAGAAGAGGGTTTTTAGAAACTGTGAAGTTAGATGCTAAGAGGGTCCTTGAGGTTCTCCGTCAAGACGGTCCTGGTCTTGATGCTAGGTTGGTTTTAGGTGAGTTGCGCATAAAGCCATCTGGGCTTCTTGTGAGGGAGGTTCTCTTTGGAATTTTGAAGAACATAAATTGTGAGAATAAAACTAGGTGTGCAAAGCTAGCATATAAATTTTTTGTGTGGTGTGGTCAGCGAGAGGGTTACCAGCACACTGTGAATTCCTATCACTTACTTATGAACATATATGCCGAGTGCGAGGAGTTTAAGGCACTGTGGAGATTGGTCGATGAGATGATTGAGAAAGGGCTTCCAGCTACTGCCCGGACTTTCAATATCTTGATTCGTACTTGTGGTGAGGCGGGATTGGCAAAGAAATTGGTGGAGAGGTTCATAAAATCGAAGACTTTCAATTTTAGGCCTTTCAAGCACTCCTACAATGCAATCCTGCACAGTCTTCTTGTTTTAAACCAGTACAAGTTGATTGAGTGGGTTTATCAGCAGATGTTGCTTGATGGATTTTCTTCGGATATTTTAACTTATAATATTGTCATGTATGCTAAGTACAGACTTGGAAAGTTGGATCAATTCCACAAACTACTTGATGAGATGGGTAGATCTGGATTTTCTCCAGATTTTCATACCTTTAATATTCTTCTTCACGTTCTTGGAAAAGGAGACAAACCACTTGCAGCACTCAATCTTTTAAATCACATGAGAGAAATGGGCATAGACCCAACTGTGCTTCATTTTACTACATTGATAGATGGACTCAGCAGAGCTGGGAATCTGGATGCTTGCAAATATTTTTTTGATGAAATGATAAAGAATGGATGCATCCCAGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCTCGTGAGCTTGAGAAAGCACTGGAAATGTATCAAGATATGATTTCTAGAGAACAAATTCCAAATGTTTTTACATACAATTCCATAATTCGGGGATTATGTATGGCAGGAAAATTTGATGAAGCGTGCTCAATGTTCAAGGAAATGGAGATGAAAGGCTGTAGTCCAAACTCTGTTGTCTATAATACATTAGTGAATAGTTTGCGAAATGCTGGAAGGACCACTGATGCTCATGAAGTGATAAGACAGATGACAGAGAAGGCAAAGTATTCTGACACACATTCAAGATTCAAAGGACATAAGGCTTAG 1410 0.4007 MDINPFGSTVGFWKLPLQGNSMIPLAKSLLWSIFRLDYDYTVDERLHLKEEWGYNQKQFSLRRGFLETVKLDAKRVLEVLRQDGPGLDARLVLGELRIKPSGLLVREVLFGILKNINCENKTRCAKLAYKFFVWCGQREGYQHTVNSYHLLMNIYAECEEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKKLVERFIKSKTFNFRPFKHSYNAILHSLLVLNQYKLIEWVYQQMLLDGFSSDILTYNIVMYAKYRLGKLDQFHKLLDEMGRSGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIDPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCIPDVVAYTVMITGYVVARELEKALEMYQDMISREQIPNVFTYNSIIRGLCMAGKFDEACSMFKEMEMKGCSPNSVVYNTLVNSLRNAGRTTDAHEVIRQMTEKAKYSDTHSRFKGHKA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02975 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Pste4g02975 469 Pfam PPR repeat family 249 295 IPR002885 -
Pste4g02975 469 Pfam PPR repeat family 388 435 IPR002885 -
Pste4g02975 469 Pfam PPR repeat family 144 190 IPR002885 -
Pste4g02975 469 Pfam PPR repeat family 318 365 IPR002885 -
Pste4g02975 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Pste4g02975 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Pste4g02975 469 NCBIfam pentatricopeptide repeat 426 453 IPR002885 -
Pste4g02975 469 NCBIfam pentatricopeptide repeat 391 425 IPR002885 -
Pste4g02975 469 NCBIfam pentatricopeptide repeat 252 284 IPR002885 -
Pste4g02975 469 NCBIfam pentatricopeptide repeat 323 355 IPR002885 -
Pste4g02975 469 NCBIfam pentatricopeptide repeat 356 389 IPR002885 -
Pste4g02975 469 NCBIfam pentatricopeptide repeat 286 319 IPR002885 -
Pste4g02975 469 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 283 459 - -
Pste4g02975 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Pste4g02975 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Pste4g02975 469 Gene3D Tetratricopeptide repeat domain 232 311 IPR011990 GO:0005515
Pste4g02975 469 Gene3D Tetratricopeptide repeat domain 312 384 IPR011990 GO:0005515
Pste4g02975 469 Gene3D Tetratricopeptide repeat domain 385 456 IPR011990 GO:0005515
Pste4g02975 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Pste4g02975 469 Gene3D Tetratricopeptide repeat domain 104 227 IPR011990 GO:0005515
Pste4g02975 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 454 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02975 148 462 Miscellaneous Gene Families AT4G11690 23.602 3.22e-29 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02975 4 21184611 21186182 Pste4g02975 4 21184611 21186182 ECH