Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01312 GTAAGTTTGGCAGTTTGTCCTGGTTGGAATGATTGCAGAGAGGACGCATTGTTTAGTGTTCTGTTTGATAATAATCCCTTGGGTGGAAGCCATTCTTCTTCACTACTGCCCTTCCCTTCTCTCTCTTCTGACTTCTGAGTGATGCTGCAGTGCATATTTCTCGTCTCAGATGCCGGTGAGGTAATGCTGGAGAAACAGCTCACGGCCCACTGCGTCCATCGCTCCATTTGTGCCTGGTTCTGGGAACAAGCCATCTCCCACGGTGACTCCTTCAAGCAACAACCAGTTATTGCCTCTCCTACGCATTATATTTTCCAAGTTTTTCGTGATGGAATCACTTTTCTGGGGTGCACACAAGTTGAAATGCCACCCTTGATGGCCATTGAGTTCCTTTGTAGGGTAGCTGATGTCCTAAATGATTATTTTGGGGCCTTAAATGAGGACGTTATTAAAGACAACTTTGTCATTGTGTATGAGCTGTTGGATGAGATGATAGACAATGGCTTCCCCTTAACTACAGAACCTTGTGTCCTGCGAGAGATGATTACTCCACCCAATATGGTTGGCAAAGCCTTGAGCATTGTGACTGGTAGCAGTTCAAATGTGAGTGATACTCTTCCCAGGGCGACAGTATCTTGTGTTCCCTGGAGAACAGCCGAGCCAAAGTACGCTAAAAATGAAGTCTATGTAGACCTTGTTGAAGAAATGGATGCCATTATAAACAGTAGTATAGTGCTTATCTTATGGAGAATTTCTTTCTTTGTAGTCACAGCTAAAGAGTTTTATTCATTCAGGGATGGGAGTTTGGTGAAATGTGAGATCTATGGTGAAGTTCAAGTAAATTCTCGTATCTCAGGTTTTCCTGATTTAACCCTTTCATTTACAAATCCTTCCATCCTAGATGATGTGAGGTTTCATCCCTGTGTTCGTTTTCGGCCTTGGGAGTCTCATCAAATTCTTTCTTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGAGTTAGAAAGTTGAAGAGTACCCCAATATATGTAAAGCCACAATTAACTTCAGACGGTGGGACTTGCCGTCTGAATGTATTGGTTGGAATAAGAAATGATACTGGAAAGACAATTGACTCAGTTACTGTTCAGTTTCAGCTCCCTCCTTTCATCTTATCAGCTGATCTGAGTTCAAATCATGGAACAGTGAACATCCTTGCTAAAAAGATGTGCATATGGTCCATTGGTCGGATCCCAAAAGATAAAGCCCCTTCCATGTCTGGAACATTGGTGATTGAAACTGGATTGGAGCGCCTTCATGTGTTCCCTATATTTCAAGTTGGTTTTAGGATGATGGGTGTCGCCCTATCCGGTCTGCAAATAGATAAACTGGATCTCAAGACTGTACCATATCGATTTTACAAAGGTTTTCGAGCTCTTACTCGAGCAGGTGAATTTGAAGTAAGATCATACCAGTTGGTAATGTTTTCTTCTGGTCATGAATTATTCTTTGGTGAATCTTACCGTGCTTATATGAGGTCAATGGAGTTTGCTTCTGTTACATTATCAAGGGGAGCAAAACCTCTGCATTCCTAG 1581 0.4225 MLQCIFLVSDAGEVMLEKQLTAHCVHRSICAWFWEQAISHGDSFKQQPVIASPTHYIFQVFRDGITFLGCTQVEMPPLMAIEFLCRVADVLNDYFGALNEDVIKDNFVIVYELLDEMIDNGFPLTTEPCVLREMITPPNMVGKALSIVTGSSSNVSDTLPRATVSCVPWRTAEPKYAKNEVYVDLVEEMDAIINSSIVLILWRISFFVVTAKEFYSFRDGSLVKCEIYGEVQVNSRISGFPDLTLSFTNPSILDDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLTSDGGTCRLNVLVGIRNDTGKTIDSVTVQFQLPPFILSADLSSNHGTVNILAKKMCIWSIGRIPKDKAPSMSGTLVIETGLERLHVFPIFQVGFRMMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRSYQLVMFSSGHELFFGESYRAYMRSMEFASVTLSRGAKPLHS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01312 479 PIRSF AP_complex_mu 213 439 IPR001392 GO:0006886|GO:0016192|GO:0030131
Pste4g01312 479 PIRSF AP_complex_mu 1 204 IPR001392 GO:0006886|GO:0016192|GO:0030131
Pste4g01312 479 ProSiteProfiles Mu homology domain (MHD) profile. 201 437 IPR028565 -
Pste4g01312 479 Gene3D Mu homology domain, subdomain B 167 433 - -
Pste4g01312 479 PANTHER AP COMPLEX SUBUNIT MU 1 437 - -
Pste4g01312 479 Pfam Adaptor complexes medium subunit family 218 437 IPR028565 -
Pste4g01312 479 CDD AP3_Mu_N 3 142 - -
Pste4g01312 479 Gene3D Mu homology domain, subdomain B 295 436 - -
Pste4g01312 479 SUPERFAMILY SNARE-like 1 142 IPR011012 -
Pste4g01312 479 CDD AP-3_Mu3_Cterm 167 437 - -
Pste4g01312 479 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 167 437 IPR036168 -
Pste4g01312 479 FunFam AP-2 complex subunit mu, putative 1 141 - -
Pste4g01312 479 Gene3D - 1 142 - -
Pste4g01312 479 PRINTS Clathrin coat assembly protein signature 169 197 IPR001392 GO:0006886|GO:0016192|GO:0030131
Pste4g01312 479 PRINTS Clathrin coat assembly protein signature 253 280 IPR001392 GO:0006886|GO:0016192|GO:0030131
Pste4g01312 479 PRINTS Clathrin coat assembly protein signature 360 371 IPR001392 GO:0006886|GO:0016192|GO:0030131
Pste4g01312 479 PRINTS Clathrin coat assembly protein signature 100 127 IPR001392 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01312 Pste-Chr4 9683045 9685771 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01312 4 9683045 9685771 Pste4g01312 4 9683045 9685771 ECH
Pste5g02977 5 22631717 22634723 Pste4g01312 4 9683045 9685771 PCT