Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03662 ATGGTGAGCTTCCTCTTTGATCTGCTCTTCCGCAAACGCTTCTGCATTCTCAACAACCGTAGATCTGGACCCAATTCGCTGCGATTTCATGCTTCTCCTTTATGCTCTTCGCTCTTCAAATATCGAATCCTCTCAGACTCGAAATCAAGGATTCTGGCAAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAATCTTTTGAGGTTACTGAGTTACCAGTTAGATCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAAAGTATTCGAAGCACATACTGATTACATTAGGTGTGTGGCAGTTCATCCTACCCTTCCTTATGTGCTTTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAAGGCTGGGTCTGTACCCAGATATTTGAAGGCCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATAGGACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCTAATTTTACATTGGATGCTCATCAAAAAGGAGTGAATTGTGTTGATTATTTTACAGGCGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAGACTAAAAGTTGTGTCCAAACCCTAGAAGGTCACACGCACAATGTTTCTGCTGTGTGCTTTCATCCTGAACTTCCTATAATTATTACTGGCTCTGAGGATGGTACAGTACGCATATGGCATTCAACAACTTATAGGCTTGAGAACACATTAAACTATGGTCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGAGTTCCCGCCGAAACTGTGTCAAATTGTGCCTTGATTATGAAGTTTTCTTATCCTTACTCTTTTCTCACACCCAAAATTATTCGATGCATTCAAACAGGGTTGTGATTGGCTATGACGAAGGAACAATTATGGTCAAACTTGGGCGAGAAGTTCCTGTAGCTAGCATGGACAACAGTGGGAAAATTATCTGGTCTAAGCATAATGAAATTCAGACTGTTAATATAAAAAGTGTAGGAGCAGATGTAGAGGTTGCTGATGGAGAAAGGTTGCCTTTAGCTGTTAAGGAGTTGGGCACCTGTGATCTCTACCCGCAGAATTTAAAGCACAATCCAAATGGGAGGTTTGTTATTGTATGTGGAGATGGTGAGTATATTATATACACTGCTTTGGCATGGAGAAATAGGTCATTTGGTTCCGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGGGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATTTTCGGTGGCACTTTACTGGCGATGTGCTCCAATGATTTCATCTGCTTTTACGATTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAAATCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATCGTGATGTTGTTATGTCAAATTTAGATAATGGCAGACCTGTAGATGAGGAAGGTGTTGAAGATGCTTTTGAGCTCTTACATGAAATGAATGAACGTGTTAGGACAGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGGCTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGGCCTATGTACTTGTTGGGGTATCTTGCAAATCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAATGTTATGGGATACACTCTGCTCTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCAAATGAAATTCTACCATCAATCCCTAAAGAGCATCATAACAGTGTGGCTCATTTCCTGGAATCACGAGGGATGATAGAAGATGCTCTCGAAGTAGCTACTGATCCTGACTACAGATTTGATCTAGCGATACAACTTGGAAAACTAGATGTTGCAAAGAGTATTGCAATAGAATTGCAGAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCTATGTCTACTGGAAAGTTAGAGATGGCTGAGGAATGTTTAAAGCATGCAATGGATTTAAGTGGATTGTTACTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTTGCAATCCTTGCTAAGGAACAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTATGCTGGGTAAATTAGAAGACTGCCTTCAAATTTTGGTAGAAAGCAATCGAATTCCAGAGGCAGCTTTAATGGCTCGATCTTATCTCCCAAGTAAGGTATCAGAGATAGTGGCAATTTGGAGAAAAGATCTAAACAAGGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAAGATTGGCAAGTTGCACTTGCTGTCGAATGTAAAGCTGCAGAAACAAGGAATATCCACCCTCCTGCAGAGCAGTACATCAACCATGCTGACAAATCACACATTACCCTTGTTGAAGCTTTCAGAAACATGCAGATTGAGGAGGGAGAGGAGCATCTGGAGAATGGGGACTCTATTCATGAGTTGACTGAACAAAATGGAGAAGAGCATTACACAGAGGAACATAATGTAGAGGAAGGAAGTCAAGAGGAGGCAGTTGTAGTGGATGCAGATTCTACAGATGGTGCAGTACTCGTTAATGGTAACGAGGCTGACGAAGAGTGGGGTACGAATAATGAAGGAGCCCCGTCAGCCTAA 2904 0.407 MVSFLFDLLFRKRFCILNNRRSGPNSLRFHASPLCSSLFKYRILSDSKSRILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKSSRRNCVKLCLDYEVFLSLLFSHTQNYSMHSNRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWSKHNEIQTVNIKSVGADVEVADGERLPLAVKELGTCDLYPQNLKHNPNGRFVIVCGDGEYIIYTALAWRNRSFGSALEFVWSSEGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVMSNLDNGRPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFDLAIQLGKLDVAKSIAIELQSESKWKQLGELAMSTGKLEMAEECLKHAMDLSGLLLLYSSLGDAEGISKLAILAKEQGKNNVAFLCLFMLGKLEDCLQILVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVECKAAETRNIHPPAEQYINHADKSHITLVEAFRNMQIEEGEEHLENGDSIHELTEQNGEEHYTEEHNVEEGSQEEAVVVDADSTDGAVLVNGNEADEEWGTNNEGAPSA 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03662 967 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 239 - -
Pste3g03662 967 FunFam Coatomer subunit beta 36 319 - -
Pste3g03662 967 CDD Coatomer_WDAD_beta-like 354 829 - -
Pste3g03662 967 PANTHER COATOMER 47 309 - -
Pste3g03662 967 SMART WD40_4 239 278 IPR001680 GO:0005515
Pste3g03662 967 SMART WD40_4 195 236 IPR001680 GO:0005515
Pste3g03662 967 SMART WD40_4 10 64 IPR001680 GO:0005515
Pste3g03662 967 SMART WD40_4 109 148 IPR001680 GO:0005515
Pste3g03662 967 SMART WD40_4 152 192 IPR001680 GO:0005515
Pste3g03662 967 SMART WD40_4 67 106 IPR001680 GO:0005515
Pste3g03662 967 Pfam Coatomer WD associated region 369 813 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Pste3g03662 967 Gene3D - 40 320 IPR015943 GO:0005515
Pste3g03662 967 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 246 277 - -
Pste3g03662 967 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 219 540 IPR011048 -
Pste3g03662 967 Pfam WD domain, G-beta repeat 241 277 IPR001680 GO:0005515
Pste3g03662 967 Pfam WD domain, G-beta repeat 112 148 IPR001680 GO:0005515
Pste3g03662 967 Pfam WD domain, G-beta repeat 154 192 IPR001680 GO:0005515
Pste3g03662 967 Pfam WD domain, G-beta repeat 198 236 IPR001680 GO:0005515
Pste3g03662 967 ProSiteProfiles Trp-Asp (WD) repeats profile. 159 201 IPR001680 GO:0005515
Pste3g03662 967 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 148 - -
Pste3g03662 967 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 159 193 - -
Pste3g03662 967 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 245 IPR001680 GO:0005515
Pste3g03662 967 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 287 IPR001680 GO:0005515
Pste3g03662 967 SUPERFAMILY WD40 repeat-like 45 302 IPR036322 GO:0005515
Pste3g03662 967 CDD WD40 44 298 - -
Pste3g03662 967 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 148 IPR001680 GO:0005515
Pste3g03662 967 PIRSF Beta'-COP 312 935 IPR016453 -
Pste3g03662 967 PIRSF Beta'-COP 42 331 IPR016453 -
Pste3g03662 967 Gene3D - 640 848 - -
Pste3g03662 967 PRINTS G protein beta WD-40 repeat signature 223 237 IPR020472 -
Pste3g03662 967 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Pste3g03662 967 PRINTS G protein beta WD-40 repeat signature 179 193 IPR020472 -
Pste3g03662 967 FunFam Coatomer subunit beta 640 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03662 Pste-Chr3 28915293 28925954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03662 81 417 Miscellaneous Gene Families AT5G08390 23.315 3.65e-14 75.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03662 3 28915293 28925954 Pste3g03662 3 28915293 28925954 ECH
Pste3g03662 3 28915293 28925954 Pste6g00621 6 2320589 2333931 PCT