Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02300 GCAAGCATAAGGACATATAAGCCATCTAATGTATCTCCTCAACTTCAAATTATCTAGTTCATTTCAGCATATGTATAATGAGATTATGAGAATGAAAACCATGTCAAGGGTAGCATGCTTCACTTTCTTTGCTTTTGTATTAGCCCTTCATGTTGAATGCCGTTCTCTTCGCCCCAGTGTTTCTGATGGGGTTGACGCTGTTCAACCCCAAGAGTCTTATATACAACTCAAAGACCAAAGGGTTGAATCTTCTTCTGATGAGAATTTATGTACGCAAATGTACGGGTTCTTGCCATGTTCCAATAACATATTTGGTCATCTCTTCCTAATTTTGGTTTATGAGTACTTGTTGTTCCATGGAGAATCATATTTGGCTGCTGGGGGTGAGCAAATTTTCAAGATTCTTGGCCCTGGTGTTTTCGGTGCTAGTGCCTTTGATATTCTTGGTGCTCTTCCTGAGTCATTAATTCTTATTGTTACTGGACTTTCTAGCAACAAGGAGGAGGCACAGGAGTATGCTTCCACAAGTGTTGGTTTATTGGCTGGATCCTCCATCATGCTTCTGACTGTAGTGTGGGGAACCTGTGTTATCGTTGGCAAGCAAAAGTTGAAAAATGATTCTAACTCTTGTGGCTTAAATTCATCAAGTGGAGGAATAAAAGCATCACTGACTGGTTATGGTATCACTATGGATGTAGATACTAGAAAGATGGCAAGAATCATGGTTTTCTCAGTTATACCACTTATCATAATGCAGATTCCCAATCTGTTTCACTTCTCTTCTACATCAAGCAATGTGACCATGATAGTTGCTCTTACAGTTGCTGTTGCTTTTCTTATTTCATACTTTATTTACCAGATTTTTAAACCTCGGATAGAGAAAACAAGACTTGAGTATATTAAACATGATGACTTAATATTAAGAATTTTTCAACTTGTTGAAAAACAAACTCTGCAAAAGATCCTGGCCGAGGATGGGACTCCCAATGTAGCTGCAATAAGTGGGCTGTATCATGAAATTAATCAAAGCGGGAGAAGGGATTTATCAGCTTCTGAAGTAAGAAAGCTGTTGCTTGGGGACATGTTAACTGACACAAATATCAAAGAGGAACAGATAGCAGACATGTTAAAAGTTTTTGACAAAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTCTGTGGCTTAACAGAATACATTAACCAAACAAAGCATGCTCTTGATAGACAATACCTACCCAAAGAATCTCTCAACAAAATATATCAGAGTTTTGTCAAGCCATGGATTGAACACGTGAGAAAAGAACGTGGATTGAAGGATCATCTTATATCTGAAGTCTTAAAGCATGCTCAGAATGACATGGTTGGCAGATTGATCAACGATGATGGCACGCCTGATAAAAAAGCTATCAGCAGGTTGTTTGAGGAAATTGATGTCAACCGAGATAGGAACATTTCAAGATCTGAATTGGAGAAAGTAGTCAAGAACATCCAGTTTGGTATGGTTGTTGATGCTGAGGAAGCGGTGACAAAACTCGCTGAAGATCTTGATCTCAACAGAGATAATGAAATCAGTGAGGCTGAATTTGTTGAAGGTTTTGCAAAATGGATGAACTCAAATTCCAGTCAAGCCACTAACTCAAAACCTTCATTTGGAGTTCAGAAAACCTGGGAAGAAGTTGAAAAGGTAATGGAACGGGAACAAACCAAAGGAGCATCTGCATGGTTAACGGCTATAGGATATGTTGTGTTGGGAGTTACTATACTGTCTATTCTTGCAGAACCCTTAATTGCGAGTGTCCAAAAATTCTCTAAAATAGCAGGAATTTCATCATTTTTCGTCTCGTTCATTTTAATTTATGGAGCAGTGTTCATGAACAACATTCTTGGCTTTGTGGTGATCTCTATTCTTATATACATACGGGAGATAAGTTGGGAATTCTCAGCAGATGTACTAGTTGTGGCAATAGTTAGTGTTGTAATGGGGCTGACTGCTACTTTTCGCACCACTTTTCCTCTTTGGACATCCTTCCCTGCATACCTCATGTACCTTTTAGCATTGGTTTTGGTATTTGTCCTCAAAGATGTTCTCCATTATGTTTAGCATGTGTTCATGATTCTAATTAATAATGGGGTGGTTCCTGTGTTGAGGGAAAAGGAATTCAGATGCACACTGAATGCAAGGAAAAGTCTCCCATTATTTCGCTAGATCGGAACACAATCTGTATTACACTACCAAAATAGTAGAGCCCAAGTTCATGTCATTTTCAATAAATTTTACTACTTCAATCATCTTTAGATATCAG 2306 0.3833 MYLLNFKLSSSFQHMYNEIMRMKTMSRVACFTFFAFVLALHVECRSLRPSVSDGVDAVQPQESYIQLKDQRVESSSDENLCTQMYGFLPCSNNIFGHLFLILVYEYLLFHGESYLAAGGEQIFKILGPGVFGASAFDILGALPESLILIVTGLSSNKEEAQEYASTSVGLLAGSSIMLLTVVWGTCVIVGKQKLKNDSNSCGLNSSSGGIKASLTGYGITMDVDTRKMARIMVFSVIPLIIMQIPNLFHFSSTSSNVTMIVALTVAVAFLISYFIYQIFKPRIEKTRLEYIKHDDLILRIFQLVEKQTLQKILAEDGTPNVAAISGLYHEINQSGRRDLSASEVRKLLLGDMLTDTNIKEEQIADMLKVFDKNGDQIITKEEFVCGLTEYINQTKHALDRQYLPKESLNKIYQSFVKPWIEHVRKERGLKDHLISEVLKHAQNDMVGRLINDDGTPDKKAISRLFEEIDVNRDRNISRSELEKVVKNIQFGMVVDAEEAVTKLAEDLDLNRDNEISEAEFVEGFAKWMNSNSSQATNSKPSFGVQKTWEEVEKVMEREQTKGASAWLTAIGYVVLGVTILSILAEPLIASVQKFSKIAGISSFFVSFILIYGAVFMNNILGFVVISILIYIREISWEFSADVLVVAIVSVVMGLTATFRTTFPLWTSFPAYLMYLLALVLVFVLKDVLHYV 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02300 691 ProSiteProfiles EF-hand calcium-binding domain profile. 495 530 IPR002048 GO:0005509
Pste3g02300 691 Gene3D - 400 539 - -
Pste3g02300 691 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Pste3g02300 691 ProSitePatterns EF-hand calcium-binding domain. 371 383 IPR018247 -
Pste3g02300 691 FunFam Sodium/calcium exchanger NCL 399 539 - -
Pste3g02300 691 Pfam EF-hand domain pair 460 523 IPR002048 GO:0005509
Pste3g02300 691 Gene3D - 318 399 - -
Pste3g02300 691 SMART efh_1 499 527 IPR002048 GO:0005509
Pste3g02300 691 SMART efh_1 362 390 IPR002048 GO:0005509
Pste3g02300 691 SMART efh_1 460 488 IPR002048 GO:0005509
Pste3g02300 691 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Pste3g02300 691 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 610 684 IPR004713 GO:0006812|GO:0008324|GO:0016020
Pste3g02300 691 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Pste3g02300 691 CDD EFh 465 525 IPR002048 GO:0005509
Pste3g02300 691 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Pste3g02300 691 SUPERFAMILY EF-hand 329 528 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02300 Pste-Chr3 16244898 16249788 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02300 411 684 EF-hand Containing Proteins AT1G53210 34.347 3.44e-45 168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02300 3 16244898 16249788 Pste3g02300 3 16244898 16249788 ECH